Gene: AT2G28830 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G28830
Transcript Identifier
AT2G28830.1
Gene Type
Coding gene
Location
2 : 12367001-12370608 : negative

Family

Gene family
HOM03M000053
(736 genes in 16 species)
specific family
Subfamily
ORTHO03M000507
(14 genes in 11 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
PLANT U-BOX 12
Curated Summary
Encodes a U-box E3 ubiquitin ligase involved in ubiquitination of pattern recognition receptor FLS2.
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Identifiers

Identifier Name
aliasPLANT U-BOX 12
aliasAtPUB12
aliasPUB12
uniprotQ9ZV31
uniprotQ84WZ8

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010200IEPGene Ontologyresponse to chitin1
GO:0042742IGIGene Ontologydefense response to bacterium1
GO:0006354RCAGene OntologyDNA-dependent transcription, elongation1
GO:0006412IEAUniProttranslation1 2
GO:0016567IEAInterProprotein ubiquitination
GO:0044260IEAPLAZA Homologycellular macromolecule metabolic processHOM03M000053
GO:0032446IEAPLAZA Homologyprotein modification by small protein conjugationHOM03M000053
GO:0070647IEAPLAZA Homologyprotein modification by small protein conjugation or removalHOM03M000053
GO:0043412IEAPLAZA Homologymacromolecule modificationHOM03M000053
GO:0044267IEAPLAZA Homologycellular protein metabolic processHOM03M000053
GO:0006464IEAPLAZA Homologycellular protein modification processHOM03M000053
GO:0036211IEAPLAZA Homologyprotein modification processHOM03M000053
GO:0019538IEAPLAZA Homologyprotein metabolic processHOM03M000053

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004842IEA, IDAUniProtubiquitin-protein ligase activity1 2 3 4 5
GO:0019843IEAUniProtrRNA binding1 2
GO:0003735IEAUniProtstructural constituent of ribosome1 2
GO:0005515IEAInterProprotein binding
GO:0005488IEAInterProbinding
GO:0016874IEAPLAZA Homologyligase activityHOM03M000053
GO:0019787IEAPLAZA Homologysmall conjugating protein ligase activityHOM03M000053
GO:0016881IEAPLAZA Homologyacid-amino acid ligase activityHOM03M000053
GO:0016879IEAPLAZA Homologyligase activity, forming carbon-nitrogen bondsHOM03M000053

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1
GO:0000151IEAUniProtubiquitin ligase complex1 2 3 4
GO:0005739IEAUniProtmitochondrion1 2
GO:0005840IEAUniProtribosome1 2
GO:0005622IEAInterProintracellular
GO:0032991IEAPLAZA Homologymacromolecular complexHOM03M000053
GO:1902494IEAPLAZA Homologycatalytic complexHOM03M000053
GO:0005623IEAPLAZA HomologycellHOM03M000053
GO:0043234IEAPLAZA Homologyprotein complexHOM03M000053
GO:0044464IEAPLAZA Homologycell partHOM03M000053
GO:0044424IEAPLAZA Homologyintracellular partHOM03M000053

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000114Ribosomal protein L16
IPR000225Armadillo
IPR016180Ribosomal protein L10e/L16
IPR011989Armadillo-like helical
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR016024Armadillo-type fold
IPR003613U box domain
IPR020798Ribosomal protein L16, conserved site

Mapman id Description
29.5.11.4.2protein.degradation.ubiquitin.E3.RING
No SignalP domains detected for this gene.