Gene: AT2G27600 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G27600
Transcript Identifier
AT2G27600.1
Gene Type
Coding gene
Location
2 : 11781226-11783730 : positive

Family

Gene family
HOM03M000030
(1059 genes in 16 species)
specific family
Subfamily
ORTHO03M002003
(9 genes in 7 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
AAA-type ATPase family protein
Curated Summary
Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function.
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Identifiers

Identifier Name
aliasSKD1
aliasVPS4
aliasATSKD1
aliasVACUOLAR PROTEIN SORTING 4
aliasSUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007032IMPGene Ontologyendosome organization1
GO:0016192IMP, RCAGene Ontologyvesicle-mediated transport1 2
GO:0007033IMPGene Ontologyvacuole organization1
GO:0010091IMPGene Ontologytrichome branching1
GO:0006623RCAGene Ontologyprotein targeting to vacuole1
GO:0006635RCAGene Ontologyfatty acid beta-oxidation1
GO:0006869RCAGene Ontologylipid transport1
GO:0006891RCAGene Ontologyintra-Golgi vesicle-mediated transport1
GO:0010351RCAGene Ontologylithium ion transport1
GO:0016197RCAGene Ontologyendosomal transport1
GO:0016558RCAGene Ontologyprotein import into peroxisome matrix1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005524ISS, IEAGene OntologyATP binding1
GO:0005515IPIGene Ontologyprotein binding1
GO:0017111IEAInterPronucleoside-triphosphatase activity
GO:0000166IEAInterPronucleotide binding
GO:0032555IEAPLAZA Homologypurine ribonucleotide bindingHOM03M000030
GO:0016817IEAPLAZA Homologyhydrolase activity, acting on acid anhydridesHOM03M000030
GO:0032553IEAPLAZA Homologyribonucleotide bindingHOM03M000030
GO:0043168IEAPLAZA Homologyanion bindingHOM03M000030
GO:0043167IEAPLAZA Homologyion bindingHOM03M000030
GO:0035639IEAPLAZA Homologypurine ribonucleoside triphosphate bindingHOM03M000030
GO:0097367IEAPLAZA Homologycarbohydrate derivative bindingHOM03M000030
GO:0003824IEAPLAZA Homologycatalytic activityHOM03M000030
GO:0016818IEAPLAZA Homologyhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesHOM03M000030
GO:0032559IEAPLAZA Homologyadenyl ribonucleotide bindingHOM03M000030
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03M000030
GO:0016462IEAPLAZA Homologypyrophosphatase activityHOM03M000030
GO:0030554IEAPLAZA Homologyadenyl nucleotide bindingHOM03M000030
GO:0001882IEAPLAZA Homologynucleoside bindingHOM03M000030
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03M000030
GO:0017076IEAPLAZA Homologypurine nucleotide bindingHOM03M000030
GO:0036094IEAPLAZA Homologysmall molecule bindingHOM03M000030
GO:0032549IEAPLAZA Homologyribonucleoside bindingHOM03M000030
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03M000030
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03M000030
GO:0001883IEAPLAZA Homologypurine nucleoside bindingHOM03M000030
GO:0032550IEAPLAZA Homologypurine ribonucleoside bindingHOM03M000030

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IDA, ISMGene Ontologycytoplasm1 2
GO:0005771IDAGene Ontologymultivesicular body1
GO:0005634IDAGene Ontologynucleus1
GO:0009506IDAGene Ontologyplasmodesma1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003593AAA+ ATPase domain
IPR003960ATPase, AAA-type, conserved site
IPR015415Vps4 oligomerisation, C-terminal
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR003959ATPase, AAA-type, core
IPR007330MIT

Mapman id Description
29.5.9protein.degradation.AAA type
No SignalP domains detected for this gene.