PLAZA 3.0 Monocots gene overview : AT2G25930

Gene: AT2G25930 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G25930
Transcript Identifier: AT2G25930.1
Gene Type: Coding gene
Location: 2 : 11059459-11063178 : positive

Family

Gene family: HOM03M003139
(28 genes in 13 species)
specific family

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Descriptions

Description: hydroxyproline-rich glycoprotein family protein

Curated Summary: Encodes a nuclear protein that is expressed rhythmically and interacts with phytochrome B to control plant development and flowering through a signal transduction pathway. Required component of the core circadian clock regardless of light conditions.

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Identifiers

Identifier	Name
alias	EARLY FLOWERING 3
alias	PYK20
alias	ELF3
uniprot	O82804

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009409	IEP	UniProt	response to cold	1 2 3 4 5 6 7 8
GO:0009733	IEP	UniProt	response to auxin	1 2 3 4 5 6 7 8
GO:0009737	IEP	UniProt	response to abscisic acid	1 2 3 4 5 6 7 8
GO:0009826	IMP	UniProt	unidimensional cell growth	1 2 3 4 5 6 7 8
GO:0009909	IMP, RCA,	UniProt	regulation of flower development	1 2 3 4 5 6 7 8 9
GO:0009585	IMP	UniProt	red, far-red light phototransduction	1 2 3 4 5 6 7 8
GO:0007623	IMP, RCA,	UniProt	circadian rhythm	1 2 3 4 5 6 7 8 9
GO:0010031	IMP	UniProt	circumnutation	1 2 3 4 5 6 7 8
GO:0048573	IMP, RCA,	UniProt	photoperiodism, flowering	1 2 3 4 5 6 7 8 9
GO:0010119	IMP	UniProt	regulation of stomatal movement	1 2 3 4 5 6 7 8
GO:0006351	IEA	UniProt	transcription, DNA-templated	1 2 3 4 5 6 7
GO:0050879	IEA	PLAZA Homology	multicellular organismal movement	HOM03M003139

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003700	ISS	UniProt	sequence-specific DNA binding transcription factor activity	1 2 3 4 5 6 7 8
GO:0008022	IPI	Gene Ontology	protein C-terminus binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISM,	UniProt	nucleus	1 2 3 4 5 6 7 8 9

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

No InterPro domains detected for this gene.

Mapman id	Description
27.3.47	RNA.regulation of transcription.ELF3

No SignalP domains detected for this gene.