PLAZA 3.0 Monocots gene overview : AT2G17730

Gene: AT2G17730 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G17730
Transcript Identifier: AT2G17730.2
Gene Type: Coding gene
Location: 2 : 7704142-7705436 : positive

Family

Gene family: HOM03M000020
(1544 genes in 16 species)
specific family

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Descriptions

Description: NEP-interacting protein 2

Curated Summary: Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane.

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Identifiers

Identifier	Name
alias	NEP-interacting protein 2
alias	NIP2
uniprot	Q8GT74

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009299	IPI	Gene Ontology	mRNA transcription	1
GO:0009416	IEP	Gene Ontology	response to light stimulus	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0008270	IEA, ISS	UniProt	zinc ion binding	1 2 3 4 5 6
GO:0005515	IPI, IEA	Gene Ontology	protein binding	1
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03M000020
GO:0005488	IEA	PLAZA Homology	binding	HOM03M000020
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03M000020
GO:0046914	IEA	PLAZA Homology	transition metal ion binding	HOM03M000020
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03M000020

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009535	IEA, IDA	UniProt	chloroplast thylakoid membrane	1 2 3 4 5 6
GO:0031351	IDA	Gene Ontology	integral to plastid membrane	1
GO:0016021	IEA	UniProt	integral to membrane	1 2 3 4 5

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR027367	YMGG-like Gly-zipper

Mapman id	Description
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING

No SignalP domains detected for this gene.