Gene: AT2G04270 (Arabidopsis thaliana)

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Gene Identifier
AT2G04270
Transcript Identifier
AT2G04270.5
Gene Type
Coding gene
Location
2 : 1474961-1480014 : positive

Family

Gene family
HOM03M005134
(19 genes in 15 species)
specific family
Subfamily
ORTHO03M015880
(3 genes in 3 species)
specific family

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Descriptions

Description
RNAse E/G-like
Curated Summary
Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.
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Identifiers

Identifier Name
aliasRNE
aliasRNEE/G
aliasRNase E
aliasRNAse E/G-like
uniprotF4IV66

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009658IMPGene Ontologychloroplast organization1
GO:0009902RCAGene Ontologychloroplast relocation1
GO:0010027RCAGene Ontologythylakoid membrane organization1
GO:0016556RCAGene OntologymRNA modification1
GO:0034660RCAGene OntologyncRNA metabolic process1
GO:0042793RCAGene Ontologytranscription from plastid promoter1
GO:0010239IMPGene Ontologychloroplast mRNA processing1
GO:1901259IMPGene Ontologychloroplast rRNA processing1
GO:0090305IEAUniProtnucleic acid phosphodiester bond hydrolysis1 2 3 4 5 6
GO:0006396IEAUniProtRNA processing1 2 3 4 5 6

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004521IDAGene Ontologyendoribonuclease activity1
GO:0004519IEAUniProtendonuclease activity1 2 3 4 5 6
GO:0004540IEAUniProtribonuclease activity1 2 3 4 5 6
GO:0003723IEAUniProtRNA binding1 2 3 4 5 6
GO:2001070IEAUniProtstarch binding1 2 3 4 5 6
GO:0030246IEAInterProcarbohydrate binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISMGene Ontologycytoplasm1
GO:0009507IDA, IMPGene Ontologychloroplast1 2
GO:0009570IEAUniProtchloroplast stroma1 2 3 4 5 6

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013784Carbohydrate-binding-like fold
IPR012340Nucleic acid-binding, OB-fold
IPR013783Immunoglobulin-like fold
IPR002044Carbohydrate binding module family 20
IPR019307RNA-binding protein AU-1/Ribonuclease E/G
IPR004659Ribonuclease E/G

Mapman id Description
27.1.19RNA.processing.ribonucleases
No SignalP domains detected for this gene.