PLAZA 3.0 Monocots gene overview : AT2G02950

Gene: AT2G02950 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G02950
Transcript Identifier: AT2G02950.1
Gene Type: Coding gene
Location: 2 : 855149-856468 : negative

Family

Gene family: HOM03M007917
(11 genes in 5 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: phytochrome kinase substrate 1

Curated Summary: Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state. PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner. It is postulated to be a negative regulator of phyB signalling.

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Identifiers

Identifier	Name
alias	PKS1
alias	phytochrome kinase substrate 1
uniprot	Q9SWI1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009585	IMP	UniProt	red, far-red light phototransduction	1 2 3 4 5 6 7 8 9 10
GO:0009638	IGI	UniProt	phototropism	1 2 3 4 5 6 7 8 9 10
GO:0010017	IMP	Gene Ontology	red or far-red light signaling pathway	1
GO:0010114	IEP	UniProt	response to red light	1 2 3 4 5 6 7 8 9 10
GO:0010218	IEP	UniProt	response to far red light	1 2 3 4 5 6 7 8 9 10
GO:0009958	IMP	UniProt	positive gravitropism	1 2 3 4 5 6 7 8 9 10
GO:0009637	RCA	Gene Ontology	response to blue light	1
GO:0010155	RCA	Gene Ontology	regulation of proton transport	1
GO:0046777	RCA	Gene Ontology	protein autophosphorylation	1
GO:0007602	IEA	PLAZA Homology	phototransduction	HOM03M007917

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IPI	Gene Ontology	protein binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	IDA, ISM,	UniProt	plasma membrane	1 2 3 4 5 6 7 8 9 10 11
GO:0005737	NAS	UniProt	cytoplasm	1 2 3 4 5 6 7 8 9 10

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

No InterPro domains detected for this gene.

Mapman id	Description
30.11	signalling.light

No SignalP domains detected for this gene.