PLAZA 3.0 Monocots gene overview : AT2G02040

Gene: AT2G02040 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G02040
Transcript Identifier: AT2G02040.1
Gene Type: Coding gene
Location: 2 : 487542-489707 : positive

Family

Gene family: HOM03M000029
(1065 genes in 15 species)
specific family
Subfamily: ORTHO03M000688
(12 genes in 6 species)
specific family
Duplication type: Tandem duplicate

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Descriptions

Description: peptide transporter 2

Curated Summary: Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.

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Identifiers

Identifier	Name
alias	NITRATE TRANSPORTER 1
alias	PTR2
alias	ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2
alias	peptide transporter 2
alias	NTR1
alias	ATPTR2
alias	PTR2-B
alias	ATPTR2-B
uniprot	P46032

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006869	RCA	Gene Ontology	lipid transport	1
GO:0006891	RCA	Gene Ontology	intra-Golgi vesicle-mediated transport	1
GO:0010351	RCA	Gene Ontology	lithium ion transport	1
GO:0016558	RCA	Gene Ontology	protein import into peroxisome matrix	1
GO:0042938	IDA	Gene Ontology	dipeptide transport	1
GO:0042939	IDA	Gene Ontology	tripeptide transport	1
GO:0015833	TAS	Gene Ontology	peptide transport	1
GO:0015031	IEA	UniProt	protein transport	1 2 3 4 5 6
GO:0006857	IEA	InterPro	oligopeptide transport
GO:0006810	IEA	InterPro	transport
GO:0051234	IEA	PLAZA Homology	establishment of localization	HOM03M000029
GO:0051179	IEA	PLAZA Homology	localization	HOM03M000029

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005215	ISS, IEA	Gene Ontology	transporter activity	1
GO:0015112	IDA	Gene Ontology	nitrate transmembrane transporter activity	1
GO:0015334	IDA	UniProt	high affinity oligopeptide transporter activity	1 2 3 4 5 6 7
GO:0042936	IDA, IGI,	UniProt	dipeptide transporter activity	1 2 3 4 5 6 7 8
GO:0042937	IDA	UniProt	tripeptide transporter activity	1 2 3 4 5 6 7
GO:0015197	ISS	Gene Ontology	peptide transporter activity	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	ISM	Gene Ontology	plasma membrane	1
GO:0005773	IDA	Gene Ontology	vacuole	1
GO:0000325	IDA	Gene Ontology	plant-type vacuole	1
GO:0005774	IDA	Gene Ontology	vacuolar membrane	1
GO:0009705	IDA	UniProt	plant-type vacuole membrane	1 2 3 4 5 6 7
GO:0005794	IDA	UniProt	Golgi apparatus	1 2 3 4 5 6 7
GO:0016021	IEA	UniProt	integral to membrane	1 2 3 4 5 6
GO:0016020	IEA	InterPro	membrane

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR018456	PTR2 family proton/oligopeptide symporter, conserved site
IPR000109	Proton-dependent oligopeptide transporter family
IPR016196	Major facilitator superfamily domain, general substrate transporter

Mapman id	Description
34.3	transport.amino acids

No SignalP domains detected for this gene.