PLAZA 3.0 Monocots gene overview : AT1G72520

Gene: AT1G72520 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G72520
Transcript Identifier: AT1G72520.1
Gene Type: Coding gene
Location: 1 : 27308611-27312589 : positive

Family

Gene family: HOM03M000226
(224 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: PLAT/LH2 domain-containing lipoxygenase family protein

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Identifiers

Identifier	Name
alias	lipoxygenase 4
alias	Arabidopsis thaliana lipoxygenase 4
alias	LOX4
alias	ATLOX4
uniprot	Q9FNX8

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009611	IEP, RCATAS,	UniProt	response to wounding	1 2 3 4 5 6 7 8 9 10
GO:0009617	IEP	UniProt	response to bacterium	1 2 3 4 5 6 7 8
GO:0010193	IEP	UniProt	response to ozone	1 2 3 4 5 6 7 8
GO:0009555	IGI	UniProt	pollen development	1 2 3 4 5 6 7 8
GO:0009901	IGI	UniProt	anther dehiscence	1 2 3 4 5 6 7 8
GO:0048653	IGI	Gene Ontology	anther development	1
GO:0080086	IGI	UniProt	stamen filament development	1 2 3 4 5 6 7 8
GO:0034440	IDA	UniProt	lipid oxidation	1 2 3 4 5 6 7 8
GO:0009620	RCA	Gene Ontology	response to fungus	1
GO:0009695	RCA, TAS	Gene Ontology	jasmonic acid biosynthetic process	1 2
GO:0009753	RCA	Gene Ontology	response to jasmonic acid	1
GO:0009873	RCA	Gene Ontology	ethylene mediated signaling pathway	1
GO:0010200	RCA	Gene Ontology	response to chitin	1
GO:0052542	RCA	Gene Ontology	defense response by callose deposition	1
GO:0006952	TAS	Gene Ontology	defense response	1
GO:0040007	TAS	Gene Ontology	growth	1
GO:0031408	IEA	UniProt	oxylipin biosynthetic process	1 2 3 4 5 6 7
GO:0055114	IEA	InterPro	oxidation-reduction process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016165	IDA, IEA,	UniProt	linoleate 13S-lipoxygenase activity	1 2 3 4 5 6 7 8
GO:0005506	IEA	UniProt	iron ion binding	1 2 3 4 5 6 7
GO:0005515	IEA	InterPro	protein binding
GO:0016702	IEA	InterPro	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	IEA	InterPro	metal ion binding
GO:0051213	IEA	PLAZA Homology	dioxygenase activity	HOM03M000226
GO:0016701	IEA	PLAZA Homology	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	HOM03M000226

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	IEA, ISM	UniProt	chloroplast	1 2 3 4 5 6 7 8

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001246	Lipoxygenase, plant
IPR001024	PLAT/LH2 domain
IPR013819	Lipoxygenase, C-terminal
IPR000907	Lipoxygenase
IPR008976	Lipase/lipooxygenase, PLAT/LH2
IPR020834	Lipoxygenase, conserved site
IPR027433	Lipoxygenase, domain 3
IPR020833	Lipoxygenase, iron binding site

Mapman id	Description
17.7.1.2	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase

No SignalP domains detected for this gene.