PLAZA 3.0 Monocots gene overview : AT1G60950

Gene: AT1G60950 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G60950
Transcript Identifier: AT1G60950.1
Gene Type: Coding gene
Location: 1 : 22444565-22445011 : positive

Family

Gene family: HOM03M000537
(122 genes in 16 species)
specific family
Subfamily: ORTHO03M001830
(9 genes in 6 species)
specific family
Duplication type: Block duplicate

Loading...please wait

Descriptions

Description: 2Fe-2S ferredoxin-like superfamily protein

Curated Summary: encodes a major leaf ferredoxin

Show more...

Identifiers

Identifier	Name
alias	FERREDOXIN 2
alias	FED A
alias	FD2
alias	ATFD2
uniprot	P16972

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009767	IMP, TAS,	UniProt	photosynthetic electron transport chain	1 2 3 4 5 6 7 8
GO:0009416	IEP	Gene Ontology	response to light stimulus	1
GO:0009637	RCA	Gene Ontology	response to blue light	1
GO:0009644	RCA	Gene Ontology	response to high light intensity	1
GO:0009744	RCA	Gene Ontology	response to sucrose	1
GO:0009773	RCA	Gene Ontology	photosynthetic electron transport in photosystem I	1
GO:0010114	RCA	Gene Ontology	response to red light	1
GO:0010155	RCA	Gene Ontology	regulation of proton transport	1
GO:0010207	RCA	Gene Ontology	photosystem II assembly	1
GO:0010218	RCA	Gene Ontology	response to far red light	1
GO:0042742	RCA	Gene Ontology	defense response to bacterium	1
GO:0022900	IEA	InterPro	electron transport chain
GO:0080167	ISO	PLAZA Integrative Orthology	response to karrikin	AT1G10960

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0051537	IEA	UniProt	2 iron, 2 sulfur cluster binding	1 2 3 4 5 6
GO:0009055	IEA	UniProt	electron carrier activity	1 2 3 4 5 6
GO:0046872	IEA	UniProt	metal ion binding	1 2 3 4 5 6
GO:0051536	IEA	InterPro	iron-sulfur cluster binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	IDA, ISM,	UniProt	chloroplast	1 2 3 4 5 6 7 8
GO:0009570	TAS	Gene Ontology	chloroplast stroma	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site
IPR001041	2Fe-2S ferredoxin-type domain
IPR010241	Ferredoxin [2Fe-2S], plant
IPR012675	Beta-grasp domain

Mapman id	Description
1.1.5.2	PS.lightreaction.other electron carrier (ox/red).ferredoxin

No SignalP domains detected for this gene.