Gene: AT1G59760 (Arabidopsis thaliana)

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Gene Identifier
AT1G59760
Transcript Identifier
AT1G59760.1
Gene Type
Coding gene
Location
1 : 21984571-21990110 : negative

Family

Gene family
HOM03M000844
(83 genes in 16 species)
specific family
Subfamily
ORTHO03M003924
(7 genes in 6 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
RNA helicase, ATP-dependent, SK12/DOB1 protein
Curated Summary
Encodes MTR4, a putative RNA helicase and exosome co-factor. Required for proper rRNA biogenesis and development.
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Identifiers

Identifier Name
aliasMTR4
aliashomolog of yeast MTR4
aliasAtMTR4

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006364IMPGene OntologyrRNA processing1
GO:0031125IMPGene OntologyrRNA 3'-end processing1
GO:0000398RCAGene OntologymRNA splicing, via spliceosome1
GO:0000724RCAGene Ontologydouble-strand break repair via homologous recombination1
GO:0000741RCAGene Ontologykaryogamy1
GO:0006355RCAGene Ontologyregulation of transcription, DNA-dependent1
GO:0006406RCAGene OntologymRNA export from nucleus1
GO:0006606RCAGene Ontologyprotein import into nucleus1
GO:0009560RCAGene Ontologyembryo sac egg cell differentiation1
GO:0009640RCAGene Ontologyphotomorphogenesis1
GO:0009909RCAGene Ontologyregulation of flower development1
GO:0010074RCAGene Ontologymaintenance of meristem identity1
GO:0010212RCAGene Ontologyresponse to ionizing radiation1
GO:0010388RCAGene Ontologycullin deneddylation1
GO:0016567RCAGene Ontologyprotein ubiquitination1
GO:0016571RCAGene Ontologyhistone methylation1
GO:0016579RCAGene Ontologyprotein deubiquitination1
GO:0030422RCAGene Ontologyproduction of siRNA involved in RNA interference1
GO:0035196RCAGene Ontologyproduction of miRNAs involved in gene silencing by miRNA1
GO:0043687RCAGene Ontologypost-translational protein modification1
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0048825RCAGene Ontologycotyledon development1
GO:0051301RCAGene Ontologycell division1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008026ISS, IEAGene OntologyATP-dependent helicase activity1
GO:0004386IEAInterProhelicase activity
GO:0016818IEAInterProhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003676IEAInterPronucleic acid binding
GO:0005524IEAInterProATP binding
GO:0070035IEAPLAZA Homologypurine NTP-dependent helicase activityHOM03M000844

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMGene Ontologynucleus1 2

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011545DNA/RNA helicase, DEAD/DEAH box type, N-terminal
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR014001Helicase, superfamily 1/2, ATP-binding domain
IPR012961DSH, C-terminal
IPR001650Helicase, C-terminal
IPR025696rRNA-processing arch domain

Mapman id Description
27.1RNA.processing
No SignalP domains detected for this gene.