PLAZA 3.0 Monocots gene overview : AT1G56450

Gene: AT1G56450 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G56450
Transcript Identifier: AT1G56450.1
Gene Type: Coding gene
Location: 1 : 21141970-21144186 : positive

Family

Gene family: HOM03M002509
(34 genes in 16 species)
specific family
Subfamily: ORTHO03M002395
(9 genes in 9 species)
specific family

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Descriptions

Description: 20S proteasome beta subunit G1

Curated Summary: 20S proteasome beta subunit PBG1 (PBG1) mRNA, complete cds

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Identifiers

Identifier	Name
alias	PBG1
alias	20S proteasome beta subunit G1
uniprot	Q7DLR9

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006511	TAS	Gene Ontology	ubiquitin-dependent protein catabolic process	1
GO:0046686	IEP, RCA,	UniProt	response to cadmium ion	1 2 3 4 5 6 7 8 9
GO:0009651	IEP, RCA,	UniProt	response to salt stress	1 2 3 4 5 6 7 8 9
GO:0006094	RCA	Gene Ontology	gluconeogenesis	1
GO:0006096	RCA	Gene Ontology	glycolysis	1
GO:0006635	RCA	Gene Ontology	fatty acid beta-oxidation	1
GO:0009407	RCA	Gene Ontology	toxin catabolic process	1
GO:0043161	RCA	Gene Ontology	proteasome-mediated ubiquitin-dependent protein catabolic process	1
GO:0043248	RCA	Gene Ontology	proteasome assembly	1
GO:0051788	RCA	Gene Ontology	response to misfolded protein	1
GO:0080129	RCA	Gene Ontology	proteasome core complex assembly	1
GO:0051603	IEA	UniProt	proteolysis involved in cellular protein catabolic process	1 2 3 4 5 6 7

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0008233	ISS	Gene Ontology	peptidase activity	1
GO:0004298	IEA	UniProt	threonine-type endopeptidase activity	1 2 3 4 5 6 7
GO:0004175	IEA	InterPro	endopeptidase activity
GO:0070003	IEA	PLAZA Homology	threonine-type peptidase activity	HOM03M002509

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	ISM	Gene Ontology	cytoplasm	1
GO:0022626	IDA	UniProt	cytosolic ribosome	1 2 3 4 5 6 7 8
GO:0000502	IDA	UniProt	proteasome complex	1 2 3 4 5 6 7 8
GO:0005829	IDA	Gene Ontology	cytosol	1
GO:0005839	IEA, TAS	UniProt	proteasome core complex	1 2 3 4 5 6 7 8
GO:0005634	IEA	UniProt	nucleus	1 2 3 4 5 6 7

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR016050	Proteasome beta-type subunit, conserved site
IPR001353	Proteasome, subunit alpha/beta
IPR023333	Proteasome B-type subunit

Mapman id	Description
29.5.11.20	protein.degradation.ubiquitin.proteasom

No SignalP domains detected for this gene.