Gene: AT1G55350 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G55350
Transcript Identifier
AT1G55350.5
Gene Type
Coding gene
Location
1 : 20654463-20664501 : negative

Family

Gene family
HOM03M003492
(26 genes in 16 species)
specific family

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Descriptions

Description
calpain-type cysteine protease family
Curated Summary
Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway. It localizes to membranes and undergoes intramolecular autolytic cleavage events that release the calpain domain into the cytoplasm.
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Identifiers

Identifier Name
aliasDEK1
aliasembryo defective 1275
aliasDEFECTIVE KERNEL 1
aliasEMB80
aliasEMB1275
aliasEMBRYO DEFECTIVE 80
aliasATDEK1
uniprotQ8RVL2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009793IMP, NASRCA, UniProtembryo development ending in seed dormancy1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0001708IMPGene Ontologycell fate specification1
GO:0009960IMPGene Ontologyendosperm development1
GO:0040014IMPGene Ontologyregulation of multicellular organism growth1
GO:0007062RCAGene Ontologysister chromatid cohesion1
GO:0007155RCAGene Ontologycell adhesion1
GO:0009880RCAGene Ontologyembryonic pattern specification1
GO:0010072RCAGene Ontologyprimary shoot apical meristem specification1
GO:0010090RCAGene Ontologytrichome morphogenesis1
GO:0010228RCAGene Ontologyvegetative to reproductive phase transition of meristem1
GO:0010431RCAGene Ontologyseed maturation1
GO:0045010RCAGene Ontologyactin nucleation1
GO:0045595RCAGene Ontologyregulation of cell differentiation1
GO:0048765RCAGene Ontologyroot hair cell differentiation1
GO:0051301RCAGene Ontologycell division1
GO:0071555RCAGene Ontologycell wall organization1
GO:0009957IMPUniProtepidermal cell fate specification1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0032877IMPUniProtpositive regulation of DNA endoreduplication1 2 3 4 5 6 7 8 9 10 11 12 13
GO:2000011ISSUniProtregulation of adaxial/abaxial pattern formation1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0001558IMPUniProtregulation of cell growth1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0042127IMPUniProtregulation of cell proliferation1 2 3 4 5 6 7 8 9 10 11 12 13
GO:2000014IMPUniProtregulation of endosperm development1 2 3 4 5 6 7 8 9 10 11 12 13
GO:2000024IMPUniProtregulation of leaf development1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0009934IMPUniProtregulation of meristem structural organization1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0097264IDAUniProtself proteolysis1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0090392IMPUniProtsepal giant cell differentiation1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0006508IEAInterProproteolysis

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004197IDAGene Ontologycysteine-type endopeptidase activity1
GO:0004198IEAUniProtcalcium-dependent cysteine-type endopeptidase activity1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0008234IMPUniProtcysteine-type peptidase activity1 2 3 4 5 6 7 8 9 10 11 12 13

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005886IDAGene Ontologyplasma membrane1
GO:0005737IDAGene Ontologycytoplasm1
GO:0005783IDAGene Ontologyendoplasmic reticulum1
GO:0005789IDAUniProtendoplasmic reticulum membrane1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0010008IDAUniProtendosome membrane1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0005887IDAUniProtintegral to plasma membrane1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0005622IEAInterProintracellular

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001300Peptidase C2, calpain, catalytic domain
IPR022684Peptidase C2, calpain family
IPR022683Peptidase C2, calpain, domain III
IPR000169Cysteine peptidase, cysteine active site
IPR022682Peptidase C2, calpain, large subunit, domain III
IPR008985Concanavalin A-like lectin/glucanases superfamily
IPR013320Concanavalin A-like lectin/glucanase, subgroup

Mapman id Description
29.5.3protein.degradation.cysteine protease
No SignalP domains detected for this gene.