PLAZA 3.0 Monocots gene overview : AT1G54710

Gene: AT1G54710 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G54710
Transcript Identifier: AT1G54710.1
Gene Type: Coding gene
Location: 1 : 20417019-20420733 : negative

Family

Gene family: HOM03M001856
(43 genes in 14 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: homolog of yeast autophagy 18 (ATG18) H

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Identifiers

Identifier	Name
alias	homolog of yeast autophagy 18 (ATG18) H
alias	ATATG18H
alias	ATG18H
uniprot	Q8H1Q5

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0042594	IEP	UniProt	response to starvation	1 2 3 4
GO:0007033	RCA	Gene Ontology	vacuole organization	1
GO:0016036	RCA	Gene Ontology	cellular response to phosphate starvation	1
GO:0019375	RCA	Gene Ontology	galactolipid biosynthetic process	1
GO:0042631	RCA	Gene Ontology	cellular response to water deprivation	1
GO:0006914	IEA	UniProt	autophagy	1 2 3
GO:0015031	IEA	UniProt	protein transport	1 2 3

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM	Gene Ontology	nucleus	1
GO:0034045	IEA	UniProt	pre-autophagosomal structure membrane	1 2 3
GO:0005774	IEA	UniProt	vacuolar membrane	1 2 3

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Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001680	WD40 repeat
IPR017986	WD40-repeat-containing domain
IPR015943	WD40/YVTN repeat-like-containing domain
IPR022175	Breast carcinoma amplified sequence 3

Mapman id	Description
29.5.2	protein.degradation.autophagy

No SignalP domains detected for this gene.