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WorkbenchGene: AT1G54350 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT1G54350
- Transcript Identifier
- AT1G54350.1
- Gene Type
- Coding gene
- Location
- 1 : 20286917-20290245 : positive
Family
- Gene family
Identifiers
| Identifier | Name |
|---|---|
| alias | ABCD2 |
| alias | ATP-binding cassette D2 |
| uniprot | Q6NLC1 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0000023 | RCA | Gene Ontology | maltose metabolic process | 1 |
| GO:0019252 | RCA | Gene Ontology | starch biosynthetic process | 1 |
| GO:0019761 | RCA | Gene Ontology | glucosinolate biosynthetic process | 1 |
| GO:0006200 | IEA | UniProt | ATP catabolic process | 1 2 3 4 5 |
| GO:0006810 | IEA | InterPro | transport | |
| GO:0055085 | IEA | InterPro | transmembrane transport |
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0042626 | IEA, ISS | UniProt | ATPase activity, coupled to transmembrane movement of substances | 1 2 3 4 5 6 |
| GO:0005524 | IEA | UniProt | ATP binding | 1 2 3 4 5 |
| GO:0017111 | IEA | InterPro | nucleoside-triphosphatase activity | |
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0016887 | IEA | InterPro | ATPase activity | |
| GO:0005515 | IEA | PLAZA Homology | protein binding | HOM03M000312 |
| GO:0043167 | IEA | PLAZA Homology | ion binding | HOM03M000312 |
Cellular Component
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0005886 | ISM | Gene Ontology | plasma membrane | 1 |
| GO:0009507 | IDA | UniProt | chloroplast | 1 2 3 4 5 6 |
| GO:0016021 | IEA | UniProt | integral to membrane | 1 2 3 4 5 |
| GO:0016020 | IEA | InterPro | membrane |
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
| InterPro | Description |
|---|---|
| IPR003439 | ABC transporter-like |
| IPR011527 | ABC transporter type 1, transmembrane domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR017871 | ABC transporter, conserved site |
| IPR010509 | Peroxisomal fatty acyl CoA transporter, transmembrane domain |
| IPR003593 | AAA+ ATPase domain |
| Mapman id | Description |
|---|---|
| 34.16 | transport.ABC transporters and multidrug resistance systems |
No SignalP domains detected for this gene.