PLAZA 3.0 Monocots gene overview : AT1G53750

Gene: AT1G53750 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G53750
Transcript Identifier: AT1G53750.1
Gene Type: Coding gene
Location: 1 : 20065921-20068324 : negative

Family

Gene family: HOM03M000030
(1059 genes in 16 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Loading...please wait

Descriptions

Description: regulatory particle triple-A 1A

Curated Summary: 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,

Identifiers

Identifier	Name
alias	regulatory particle triple-A 1A
alias	RPT1A
uniprot	Q9SSB5

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006511	TAS	Gene Ontology	ubiquitin-dependent protein catabolic process	1
GO:0030163	IEA	UniProt	protein catabolic process	1 2 3 4 5

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016887	IGI, ISS	Gene Ontology	ATPase activity	1 2
GO:0005524	IEA	UniProt	ATP binding	1 2 3 4 5
GO:0017111	IEA	UniProt	nucleoside-triphosphatase activity	1 2 3 4 5
GO:0016787	IEA	InterPro	hydrolase activity
GO:0000166	IEA	InterPro	nucleotide binding
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03M000030
GO:0016817	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides	HOM03M000030
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03M000030
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03M000030
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03M000030
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03M000030
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03M000030
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000030
GO:0016818	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	HOM03M000030
GO:0032559	IEA	PLAZA Homology	adenyl ribonucleotide binding	HOM03M000030
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M000030
GO:0016462	IEA	PLAZA Homology	pyrophosphatase activity	HOM03M000030
GO:0030554	IEA	PLAZA Homology	adenyl nucleotide binding	HOM03M000030
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03M000030
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03M000030
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03M000030
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03M000030
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03M000030
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03M000030
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03M000030
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03M000030

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	TAS, ISM	UniProt	nucleus	1 2 3 4 5 6 7
GO:0005886	IDA	UniProt	plasma membrane	1 2 3 4 5 6
GO:0000502	IDA	UniProt	proteasome complex	1 2 3 4 5 6
GO:0005829	IDA	UniProt	cytosol	1 2 3 4 5 6
GO:0008540	IDA	Gene Ontology	proteasome regulatory particle, base subcomplex	1
GO:0005737	IEA	InterPro	cytoplasm

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003593	AAA+ ATPase domain
IPR003960	ATPase, AAA-type, conserved site
IPR005937	26S proteasome subunit P45
IPR003959	ATPase, AAA-type, core
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
29.5.11.20	protein.degradation.ubiquitin.proteasom

No SignalP domains detected for this gene.