Gene: AT1G53720 (Arabidopsis thaliana)

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Gene Identifier
AT1G53720
Transcript Identifier
AT1G53720.1
Gene Type
Coding gene
Location
1 : 20057012-20059508 : positive

Family

Gene family
HOM03M002174
(38 genes in 16 species)
specific family

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Descriptions

Description
cyclophilin 59
Curated Summary
Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis? trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR proteins in nuclear speckles.
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Identifiers

Identifier Name
aliasCYCLOPHILIN 59
aliasATCYP59
aliasCYP59
aliascyclophilin 59

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000398RCAGene OntologymRNA splicing, via spliceosome1
GO:0006457IEAInterProprotein folding

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676ISS, IEAGene Ontologynucleic acid binding1
GO:0003755ISS, IEAGene Ontologypeptidyl-prolyl cis-trans isomerase activity1
GO:0003723IDAGene OntologyRNA binding1
GO:0005515IPIGene Ontologyprotein binding1
GO:0000166IEAInterPronucleotide binding
GO:0008270IEAInterProzinc ion binding
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03M002174

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMGene Ontologynucleus1 2
GO:0005829IDAGene Ontologycytosol1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000504RNA recognition motif domain
IPR001878Zinc finger, CCHC-type
IPR002130Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain
IPR012677Nucleotide-binding, alpha-beta plait

Mapman id Description
31.3cell.cycle
No SignalP domains detected for this gene.