PLAZA 3.0 Monocots gene overview : AT1G51950

Gene: AT1G51950 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G51950
Transcript Identifier: AT1G51950.1
Gene Type: Coding gene
Location: 1 : 19305670-19307130 : positive

Family

Gene family: HOM03M000126
(378 genes in 14 species)
specific family
Subfamily: ORTHO03M002701
(8 genes in 7 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: indole-3-acetic acid inducible 18

Identifiers

Identifier	Name
alias	IAA18
alias	indole-3-acetic acid inducible 18
uniprot	O24408

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009733	TAS, RCA	UniProt	response to auxin	1 2 3 4 5 6 7 8
GO:0009694	RCA	Gene Ontology	jasmonic acid metabolic process	1
GO:0009741	RCA	Gene Ontology	response to brassinosteroid	1
GO:0009753	RCA	Gene Ontology	response to jasmonic acid	1
GO:0048527	RCA	Gene Ontology	lateral root development	1
GO:0009734	IEA	UniProt	auxin mediated signaling pathway	1 2 3 4 5 6
GO:0006351	IEA	UniProt	transcription, DNA-templated	1 2 3 4 5 6
GO:0006355	IEA	InterPro	regulation of transcription, DNA-dependent
GO:0010468	IEA	PLAZA Homology	regulation of gene expression	HOM03M000126
GO:0010467	IEA	PLAZA Homology	gene expression	HOM03M000126
GO:0006807	IEA	PLAZA Homology	nitrogen compound metabolic process	HOM03M000126
GO:0051252	IEA	PLAZA Homology	regulation of RNA metabolic process	HOM03M000126
GO:0051171	IEA	PLAZA Homology	regulation of nitrogen compound metabolic process	HOM03M000126
GO:0019222	IEA	PLAZA Homology	regulation of metabolic process	HOM03M000126
GO:0019219	IEA	PLAZA Homology	regulation of nucleobase-containing compound metabolic process	HOM03M000126
GO:0034641	IEA	PLAZA Homology	cellular nitrogen compound metabolic process	HOM03M000126
GO:0034645	IEA	PLAZA Homology	cellular macromolecule biosynthetic process	HOM03M000126
GO:0050789	IEA	PLAZA Homology	regulation of biological process	HOM03M000126
GO:0009889	IEA	PLAZA Homology	regulation of biosynthetic process	HOM03M000126
GO:0018130	IEA	PLAZA Homology	heterocycle biosynthetic process	HOM03M000126
GO:0019438	IEA	PLAZA Homology	aromatic compound biosynthetic process	HOM03M000126
GO:0046483	IEA	PLAZA Homology	heterocycle metabolic process	HOM03M000126
GO:0016070	IEA	PLAZA Homology	RNA metabolic process	HOM03M000126
GO:0044271	IEA	PLAZA Homology	cellular nitrogen compound biosynthetic process	HOM03M000126
GO:0065007	IEA	PLAZA Homology	biological regulation	HOM03M000126
GO:0010556	IEA	PLAZA Homology	regulation of macromolecule biosynthetic process	HOM03M000126
GO:0006139	IEA	PLAZA Homology	nucleobase-containing compound metabolic process	HOM03M000126
GO:0032774	IEA	PLAZA Homology	RNA biosynthetic process	HOM03M000126
GO:0006725	IEA	PLAZA Homology	cellular aromatic compound metabolic process	HOM03M000126
GO:1901576	IEA	PLAZA Homology	organic substance biosynthetic process	HOM03M000126
GO:0090304	IEA	PLAZA Homology	nucleic acid metabolic process	HOM03M000126
GO:0080090	IEA	PLAZA Homology	regulation of primary metabolic process	HOM03M000126
GO:2001141	IEA	PLAZA Homology	regulation of RNA biosynthetic process	HOM03M000126
GO:0009058	IEA	PLAZA Homology	biosynthetic process	HOM03M000126
GO:0009059	IEA	PLAZA Homology	macromolecule biosynthetic process	HOM03M000126
GO:0060255	IEA	PLAZA Homology	regulation of macromolecule metabolic process	HOM03M000126
GO:2000112	IEA	PLAZA Homology	regulation of cellular macromolecule biosynthetic process	HOM03M000126
GO:0031323	IEA	PLAZA Homology	regulation of cellular metabolic process	HOM03M000126
GO:0031326	IEA	PLAZA Homology	regulation of cellular biosynthetic process	HOM03M000126
GO:1901360	IEA	PLAZA Homology	organic cyclic compound metabolic process	HOM03M000126
GO:1901362	IEA	PLAZA Homology	organic cyclic compound biosynthetic process	HOM03M000126
GO:0034654	IEA	PLAZA Homology	nucleobase-containing compound biosynthetic process	HOM03M000126
GO:0050794	IEA	PLAZA Homology	regulation of cellular process	HOM03M000126
GO:0044249	IEA	PLAZA Homology	cellular biosynthetic process	HOM03M000126

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003700	ISS	UniProt	sequence-specific DNA binding transcription factor activity	1 2 3 4 5 6 7
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0046983	IEA	InterPro	protein dimerization activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA, ISM	UniProt	nucleus	1 2 3 4 5 6 7
GO:0043231	IEA	PLAZA Homology	intracellular membrane-bounded organelle	HOM03M000126
GO:0043226	IEA	PLAZA Homology	organelle	HOM03M000126
GO:0043227	IEA	PLAZA Homology	membrane-bounded organelle	HOM03M000126
GO:0043229	IEA	PLAZA Homology	intracellular organelle	HOM03M000126
GO:0044424	IEA	PLAZA Homology	intracellular part	HOM03M000126

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003311	AUX/IAA protein
IPR011525	Aux/IAA-ARF-dimerisation

Mapman id	Description
27.3.40	RNA.regulation of transcription.Aux/IAA family

No SignalP domains detected for this gene.

Database	Type
PlnTFDB	AUX/IAA