PLAZA 3.0 Monocots gene overview : AT1G48900

Gene: AT1G48900 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G48900
Transcript Identifier: AT1G48900.1
Gene Type: Coding gene
Location: 1 : 18084972-18087743 : negative

Family

Gene family: HOM03M000871
(81 genes in 16 species)
specific family
Subfamily: ORTHO03M001833
(9 genes in 6 species)
specific family

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Descriptions

Description: Signal recognition particle, SRP54 subunit protein

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Identifiers

Identifier	Name
uniprot	P49967

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006617	ISS	Gene Ontology	SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1
GO:0010267	RCA	Gene Ontology	production of ta-siRNAs involved in RNA interference	1
GO:0035196	RCA	Gene Ontology	production of miRNAs involved in gene silencing by miRNA	1
GO:0051607	RCA	Gene Ontology	defense response to virus	1
GO:0006184	IEA	UniProt	GTP catabolic process	1 2 3
GO:0006614	IEA	UniProt	SRP-dependent cotranslational protein targeting to membrane	1 2 3
GO:0006613	IEA	PLAZA Homology	cotranslational protein targeting to membrane	HOM03M000871

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003729	ISS	Gene Ontology	mRNA binding	1
GO:0005525	IEA, ISS	UniProt	GTP binding	1 2 3 4
GO:0008312	IEA, ISS	UniProt	7S RNA binding	1 2 3 4
GO:0003924	IEA	UniProt	GTPase activity	1 2 3
GO:0017111	IEA	InterPro	nucleoside-triphosphatase activity
GO:0000166	IEA	InterPro	nucleotide binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	ISM	Gene Ontology	cytoplasm	1
GO:0005786	IEA, ISS	UniProt	signal recognition particle, endoplasmic reticulum targeting	1 2 3 4
GO:0005829	IDA	UniProt	cytosol	1 2 3 4
GO:0048500	IEA	InterPro	signal recognition particle

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013822	Signal recognition particle, SRP54 subunit, helical bundle
IPR004125	Signal recognition particle, SRP54 subunit, M-domain
IPR000897	Signal recognition particle, SRP54 subunit, GTPase domain
IPR022941	Signal recognition particle, SRP54 subunit
IPR003593	AAA+ ATPase domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR006325	Signal recognition particle, SRP54 subunit, eukaryotic

Mapman id	Description
29.3.4.99	protein.targeting.secretory pathway.unspecified

No SignalP domains detected for this gene.