Gene: AT1G48900 (Arabidopsis thaliana)

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Gene Identifier
AT1G48900
Transcript Identifier
AT1G48900.1
Gene Type
Coding gene
Location
1 : 18084972-18087743 : negative

Family

Gene family
HOM03M000871
(81 genes in 16 species)
specific family
Subfamily
ORTHO03M001833
(9 genes in 6 species)
specific family

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Descriptions

Description
Signal recognition particle, SRP54 subunit protein
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Identifiers

Identifier Name
uniprotP49967

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006617ISSGene OntologySRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1
GO:0010267RCAGene Ontologyproduction of ta-siRNAs involved in RNA interference1
GO:0035196RCAGene Ontologyproduction of miRNAs involved in gene silencing by miRNA1
GO:0051607RCAGene Ontologydefense response to virus1
GO:0006184IEAUniProtGTP catabolic process1 2 3
GO:0006614IEAUniProtSRP-dependent cotranslational protein targeting to membrane1 2 3
GO:0006613IEAPLAZA Homologycotranslational protein targeting to membraneHOM03M000871

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003729ISSGene OntologymRNA binding1
GO:0005525IEA, ISSUniProtGTP binding1 2 3 4
GO:0008312IEA, ISSUniProt7S RNA binding1 2 3 4
GO:0003924IEAUniProtGTPase activity1 2 3
GO:0017111IEAInterPronucleoside-triphosphatase activity
GO:0000166IEAInterPronucleotide binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISMGene Ontologycytoplasm1
GO:0005786IEA, ISSUniProtsignal recognition particle, endoplasmic reticulum targeting1 2 3 4
GO:0005829IDAUniProtcytosol1 2 3 4
GO:0048500IEAInterProsignal recognition particle

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013822Signal recognition particle, SRP54 subunit, helical bundle
IPR004125Signal recognition particle, SRP54 subunit, M-domain
IPR000897Signal recognition particle, SRP54 subunit, GTPase domain
IPR022941Signal recognition particle, SRP54 subunit
IPR003593AAA+ ATPase domain
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR006325Signal recognition particle, SRP54 subunit, eukaryotic

Mapman id Description
29.3.4.99protein.targeting.secretory pathway.unspecified
No SignalP domains detected for this gene.