Gene: AT1G48620 (Arabidopsis thaliana)

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Gene Identifier
AT1G48620
Transcript Identifier
AT1G48620.1
Gene Type
Coding gene
Location
1 : 17974148-17976301 : negative

Family

Gene family
HOM03M001476
(52 genes in 13 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
high mobility group A5
Curated Summary
This gene is predicted to encodes a histone H1/H5 family member. A plant line expressing an RNAi construct targeted against HON5 shows a reduced level of agrobacterium-mediated root transformation.
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Identifiers

Identifier Name
aliasHON5
aliashigh mobility group A5

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006334ISS, IEAGene Ontologynucleosome assembly1
GO:0009294IMPGene OntologyDNA mediated transformation1
GO:0034728IEAPLAZA Homologynucleosome organizationHOM03M001476

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677ISS, IEAGene OntologyDNA binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000786ISS, IEAGene Ontologynucleosome1
GO:0005634ISS, IEAGene Ontologynucleus1
GO:0009507IDAGene Ontologychloroplast1
GO:0005730IDAGene Ontologynucleolus1
GO:1990104IEAPLAZA HomologyDNA bending complexHOM03M001476

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR017956AT hook, DNA-binding motif
IPR005818Linker histone H1/H5, domain H15
IPR011991Winged helix-turn-helix DNA-binding domain
IPR020478AT hook-like

Mapman id Description
28.1.3.1DNA.synthesis/chromatin structure.histone.H1
No SignalP domains detected for this gene.