PLAZA 3.0 Monocots gene overview : AT1G47500

Gene: AT1G47500 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G47500
Transcript Identifier: AT1G47500.1
Gene Type: Coding gene
Location: 1 : 17432682-17434805 : positive

Family

Gene family: HOM03M000280
(194 genes in 16 species)
specific family
Subfamily: ORTHO03M000681
(12 genes in 9 species)
specific family
Duplication type: Tandem duplicate

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Descriptions

Description: RNA-binding protein 47C'

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Identifiers

Identifier	Name
alias	RBP47C'
alias	ATRBP47C'
alias	RNA-binding protein 47C'
uniprot	Q9SX80

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0034605	ISS	UniProt	cellular response to heat	1 2 3
GO:0006397	IEA	UniProt	mRNA processing	1 2 3

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003723	ISS	Gene Ontology	RNA binding	1
GO:0008143	ISS	UniProt	poly(A) RNA binding	1 2 3 4
GO:0000166	IEA	UniProt	nucleotide binding	1 2 3
GO:0003676	IEA	InterPro	nucleic acid binding
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M000280

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	ISM	Gene Ontology	cytoplasm	1
GO:0005634	ISS	UniProt	nucleus	1 2 3 4
GO:0010494	ISS	UniProt	cytoplasmic stress granule	1 2 3

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding, alpha-beta plait

Mapman id	Description
27.3.99	RNA.regulation of transcription.unclassified

No SignalP domains detected for this gene.