PLAZA 3.0 Monocots gene overview : AT1G27080

Gene: AT1G27080 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G27080
Transcript Identifier: AT1G27080.1
Gene Type: Coding gene
Location: 1 : 9400664-9403789 : positive

Family

Gene family: HOM03M000029
(1065 genes in 15 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description: nitrate transporter 1.6

Curated Summary: Encodes a protein with low-affinity nitrate transporter activity that is expressed in the vascular tissue of the funiculus and the silique. This plasma membrane-localized enzyme is predicted to have 12 transmembrane domains. Plants lacking NRT1.6 have reduced levels of nitrate in their seeds and have increased levels of early embryonic developmental defects and seed abortion.

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Identifiers

Identifier	Name
alias	NRT1.6
alias	nitrate transporter 1.6
uniprot	Q9LFX9

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009793	IMP	UniProt	embryo development ending in seed dormancy	1 2 3 4 5
GO:0010098	IMP	UniProt	suspensor development	1 2 3 4 5
GO:0043562	IEP	UniProt	cellular response to nitrogen levels	1 2 3 4 5
GO:0048316	IMP	Gene Ontology	seed development	1
GO:0080055	IDA	UniProt	low affinity nitrate transport	1 2 3 4 5
GO:0042128	IEA	UniProt	nitrate assimilation	1 2 3 4
GO:0006857	IEA	UniProt	oligopeptide transport	1 2 3 4
GO:0006810	IEA	InterPro	transport
GO:0051234	IEA	PLAZA Homology	establishment of localization	HOM03M000029
GO:0051179	IEA	PLAZA Homology	localization	HOM03M000029

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005215	ISS, IEA	Gene Ontology	transporter activity	1
GO:0080054	IDA	UniProt	low affinity nitrate transmembrane transporter activity	1 2 3 4 5
GO:0015293	IEA	UniProt	symporter activity	1 2 3 4

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	IDA, ISM,	UniProt	plasma membrane	1 2 3 4 5 6
GO:0016021	IEA	UniProt	integral to membrane	1 2 3 4
GO:0016020	IEA	InterPro	membrane

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR018456	PTR2 family proton/oligopeptide symporter, conserved site
IPR016196	Major facilitator superfamily domain, general substrate transporter
IPR000109	Proton-dependent oligopeptide transporter family

Mapman id	Description
34.13	transport.peptides and oligopeptides

No SignalP domains detected for this gene.