PLAZA 3.0 Monocots gene overview : AT1G22550

Gene: AT1G22550 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G22550
Transcript Identifier: AT1G22550.1
Gene Type: Coding gene
Location: 1 : 7966608-7968552 : negative

Family

Gene family: HOM03M000029
(1065 genes in 15 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description: Major facilitator superfamily protein

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Identifiers

Identifier	Name
uniprot	Q9SK96

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006857	IEA, ISS	UniProt	oligopeptide transport	1 2 3 4 5
GO:0006810	IEA	InterPro	transport
GO:0051234	IEA	PLAZA Homology	establishment of localization	HOM03M000029
GO:0051179	IEA	PLAZA Homology	localization	HOM03M000029

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005215	IEA, ISS	UniProt	transporter activity	1 2 3 4 5

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	ISM	Gene Ontology	plasma membrane	1
GO:0016020	ISS, IEA	Gene Ontology	membrane	1
GO:0016021	IEA	UniProt	integral to membrane	1 2 3 4

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000109	Proton-dependent oligopeptide transporter family
IPR018456	PTR2 family proton/oligopeptide symporter, conserved site
IPR016196	Major facilitator superfamily domain, general substrate transporter

Mapman id	Description
34.13	transport.peptides and oligopeptides

No SignalP domains detected for this gene.