PLAZA 3.0 Monocots gene overview : AT1G20200

Gene: AT1G20200 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G20200
Transcript Identifier: AT1G20200.1
Gene Type: Coding gene
Location: 1 : 7001409-7004154 : negative

Family

Gene family: HOM03M002154
(39 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: PAM domain (PCI/PINT associated module) protein

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Identifiers

Identifier	Name
alias	EMBRYO DEFECTIVE 2719
alias	EMB2719
alias	HAPLESS 15
alias	HAP15
uniprot	Q9LNU4

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009793	NAS	Gene Ontology	embryo development ending in seed dormancy	1
GO:0006511	TAS	Gene Ontology	ubiquitin-dependent protein catabolic process	1
GO:0006635	RCA	Gene Ontology	fatty acid beta-oxidation	1
GO:0009407	RCA	Gene Ontology	toxin catabolic process	1
GO:0042023	RCA	Gene Ontology	DNA endoreduplication	1
GO:0043161	RCA	Gene Ontology	proteasome-mediated ubiquitin-dependent protein catabolic process	1
GO:0043248	RCA	Gene Ontology	proteasome assembly	1
GO:0051510	RCA	Gene Ontology	regulation of unidimensional cell growth	1
GO:0051788	RCA	Gene Ontology	response to misfolded protein	1
GO:0080129	RCA	Gene Ontology	proteasome core complex assembly	1
GO:0050790	IEA	UniProt	regulation of catalytic activity	1 2 3 4 5
GO:0042176	IEA	UniProt	regulation of protein catabolic process	1 2 3 4 5

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0030234	IEA	UniProt	enzyme regulator activity	1 2 3 4 5
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM	Gene Ontology	nucleus	1
GO:0008541	ISS	Gene Ontology	proteasome regulatory particle, lid subcomplex	1
GO:0005886	IDA	UniProt	plasma membrane	1 2 3 4 5 6
GO:0000502	IDA, IEA,	UniProt	proteasome complex	1 2 3 4 5 6
GO:0005829	IDA	UniProt	cytosol	1 2 3 4 5 6
GO:0009506	IDA	UniProt	plasmodesma	1 2 3 4 5 6

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013143	PCI/PINT associated module
IPR000717	Proteasome component (PCI) domain
IPR013586	26S proteasome regulatory subunit, C-terminal
IPR011991	Winged helix-turn-helix DNA-binding domain

Mapman id	Description
29.5.11.20	protein.degradation.ubiquitin.proteasom

No SignalP domains detected for this gene.