Gene: AT1G19850 (Arabidopsis thaliana)

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Gene Identifier
AT1G19850
Transcript Identifier
AT1G19850.1
Gene Type
Coding gene
Location
1 : 6887353-6891182 : positive

Family

Gene family
HOM03M000112
(417 genes in 15 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
Curated Summary
Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder.
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Identifiers

Identifier Name
aliasindole-3-acetic acid inducible 24
aliasARF5
aliasAUXIN RESPONSE FACTOR 5
aliasMP
aliasMONOPTEROS
aliasIAA24
uniprotP93024

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009733IEP, RCA, UniProtresponse to auxin1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0009790IGIGene Ontologyembryo development1
GO:0009908IGIUniProtflower development1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0010305IGIUniProtleaf vascular tissue pattern formation1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0048364IGIUniProtroot development1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0048507IGI, RCA, UniProtmeristem development1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0006355IEP, IEAGene Ontologyregulation of transcription, DNA-dependent1
GO:0006346RCAGene Ontologymethylation-dependent chromatin silencing1
GO:0007155RCAGene Ontologycell adhesion1
GO:0009741RCAGene Ontologyresponse to brassinosteroid1
GO:0009855RCAGene Ontologydetermination of bilateral symmetry1
GO:0009886RCAGene Ontologypost-embryonic morphogenesis1
GO:0009887RCAGene Ontologyorgan morphogenesis1
GO:0009909RCAGene Ontologyregulation of flower development1
GO:0009944RCAGene Ontologypolarity specification of adaxial/abaxial axis1
GO:0009965RCAGene Ontologyleaf morphogenesis1
GO:0010014RCAGene Ontologymeristem initiation1
GO:0010051IMP, RCAGene Ontologyxylem and phloem pattern formation1 2
GO:0010073RCAGene Ontologymeristem maintenance1
GO:0010090RCAGene Ontologytrichome morphogenesis1
GO:0016246RCAGene OntologyRNA interference1
GO:0031048RCAGene Ontologychromatin silencing by small RNA1
GO:0045010RCAGene Ontologyactin nucleation1
GO:0048439RCAGene Ontologyflower morphogenesis1
GO:0048481RCAGene Ontologyovule development1
GO:0048519RCAGene Ontologynegative regulation of biological process1
GO:0048527RCAGene Ontologylateral root development1
GO:0048765RCAGene Ontologyroot hair cell differentiation1
GO:0051567RCAGene Ontologyhistone H3-K9 methylation1
GO:0071555RCAGene Ontologycell wall organization1
GO:0009942IMPUniProtlongitudinal axis specification1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0009734IEAUniProtauxin mediated signaling pathway1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009725IEAInterProresponse to hormone
GO:0010468IEAPLAZA Homologyregulation of gene expressionHOM03M000112
GO:0010467IEAPLAZA Homologygene expressionHOM03M000112
GO:0006807IEAPLAZA Homologynitrogen compound metabolic processHOM03M000112
GO:0051252IEAPLAZA Homologyregulation of RNA metabolic processHOM03M000112
GO:0051171IEAPLAZA Homologyregulation of nitrogen compound metabolic processHOM03M000112
GO:0019222IEAPLAZA Homologyregulation of metabolic processHOM03M000112
GO:0042221IEAPLAZA Homologyresponse to chemicalHOM03M000112
GO:0019219IEAPLAZA Homologyregulation of nucleobase-containing compound metabolic processHOM03M000112
GO:0034641IEAPLAZA Homologycellular nitrogen compound metabolic processHOM03M000112
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03M000112
GO:0050789IEAPLAZA Homologyregulation of biological processHOM03M000112
GO:0009889IEAPLAZA Homologyregulation of biosynthetic processHOM03M000112
GO:0018130IEAPLAZA Homologyheterocycle biosynthetic processHOM03M000112
GO:0019438IEAPLAZA Homologyaromatic compound biosynthetic processHOM03M000112
GO:0046483IEAPLAZA Homologyheterocycle metabolic processHOM03M000112
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03M000112
GO:0044271IEAPLAZA Homologycellular nitrogen compound biosynthetic processHOM03M000112
GO:0065007IEAPLAZA Homologybiological regulationHOM03M000112
GO:0010556IEAPLAZA Homologyregulation of macromolecule biosynthetic processHOM03M000112
GO:0006139IEAPLAZA Homologynucleobase-containing compound metabolic processHOM03M000112
GO:0032774IEAPLAZA HomologyRNA biosynthetic processHOM03M000112
GO:0009719IEAPLAZA Homologyresponse to endogenous stimulusHOM03M000112
GO:0006725IEAPLAZA Homologycellular aromatic compound metabolic processHOM03M000112
GO:1901576IEAPLAZA Homologyorganic substance biosynthetic processHOM03M000112
GO:0090304IEAPLAZA Homologynucleic acid metabolic processHOM03M000112
GO:0080090IEAPLAZA Homologyregulation of primary metabolic processHOM03M000112
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M000112
GO:0010033IEAPLAZA Homologyresponse to organic substanceHOM03M000112
GO:0009058IEAPLAZA Homologybiosynthetic processHOM03M000112
GO:0009059IEAPLAZA Homologymacromolecule biosynthetic processHOM03M000112
GO:0060255IEAPLAZA Homologyregulation of macromolecule metabolic processHOM03M000112
GO:2000112IEAPLAZA Homologyregulation of cellular macromolecule biosynthetic processHOM03M000112
GO:0031323IEAPLAZA Homologyregulation of cellular metabolic processHOM03M000112
GO:0031326IEAPLAZA Homologyregulation of cellular biosynthetic processHOM03M000112
GO:1901360IEAPLAZA Homologyorganic cyclic compound metabolic processHOM03M000112
GO:1901362IEAPLAZA Homologyorganic cyclic compound biosynthetic processHOM03M000112
GO:0034654IEAPLAZA Homologynucleobase-containing compound biosynthetic processHOM03M000112
GO:0050794IEAPLAZA Homologyregulation of cellular processHOM03M000112
GO:0044249IEAPLAZA Homologycellular biosynthetic processHOM03M000112
GO:0050896IEAPLAZA Homologyresponse to stimulusHOM03M000112

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700ISS, TAS, UniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0005515IPIGene Ontologyprotein binding1
GO:0042802IPIGene Ontologyidentical protein binding1
GO:0044212IDAUniProttranscription regulatory region DNA binding1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0046983IEAInterProprotein dimerization activity
GO:0003677IEAInterProDNA binding
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03M000112

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISS, ISM, IEA, UniProtnucleus1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0016020IDAUniProtmembrane1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0043231IEAPLAZA Homologyintracellular membrane-bounded organelleHOM03M000112
GO:0043226IEAPLAZA HomologyorganelleHOM03M000112
GO:0043227IEAPLAZA Homologymembrane-bounded organelleHOM03M000112
GO:0043229IEAPLAZA Homologyintracellular organelleHOM03M000112

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015300DNA-binding pseudobarrel domain
IPR011525Aux/IAA-ARF-dimerisation
IPR010525Auxin response factor
IPR003311AUX/IAA protein
IPR003340B3 DNA binding domain

Mapman id Description
27.3.4RNA.regulation of transcription.ARF, Auxin Response Factor family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBARF
PlantTFDBARF