Gene: AT1G19220 (Arabidopsis thaliana)

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Gene Identifier
AT1G19220
Transcript Identifier
AT1G19220.1
Gene Type
Coding gene
Location
1 : 6628395-6632779 : negative

Family

Gene family
HOM03M000112
(417 genes in 15 species)
specific family
Subfamily
ORTHO03M002028
(9 genes in 7 species)
specific family

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Descriptions

Description
auxin response factor 19
Curated Summary
Encodes an auxin response factor that contains the conserved VP1-B3 DNA-binding domain at its N-terminus and the Aux/IAA-like domains III and IV present in most ARFs at its C-terminus. The protein interacts with IAA1 (yeast two hybrid) and other auxin response elements such as ER7 and ER9 (yeast one hybrid). ARF19 protein can complement many aspects of the arf7 mutant phenotype and , together with ARF7, is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.
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Identifiers

Identifier Name
aliasARF19
aliasIAA22
aliasauxin response factor 19
aliasindole-3-acetic acid inducible 22
aliasARF11
aliasAUXIN RESPONSE FACTOR11
uniprotQ8RYC8

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009733IMP, NASRCA, UniProtresponse to auxin1 2 3 4 5 6 7 8 9 10
GO:0048366IGIUniProtleaf development1 2 3 4 5 6 7 8
GO:0048527IGI, RCAGene Ontologylateral root development1 2
GO:0009723IMPUniProtresponse to ethylene1 2 3 4 5 6 7 8
GO:0010311IGIUniProtlateral root formation1 2 3 4 5 6 7 8
GO:0007155RCAGene Ontologycell adhesion1
GO:0009741RCAGene Ontologyresponse to brassinosteroid1
GO:0010090RCAGene Ontologytrichome morphogenesis1
GO:0010583RCAGene Ontologyresponse to cyclopentenone1
GO:0045010RCAGene Ontologyactin nucleation1
GO:0048765RCAGene Ontologyroot hair cell differentiation1
GO:0071555RCAGene Ontologycell wall organization1
GO:0009734IEAUniProtauxin mediated signaling pathway1 2 3 4 5 6 7
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0009725IEAInterProresponse to hormone
GO:0009851ISOPLAZA Integrative Orthologyauxin biosynthetic processSL07G042260
GO:0010468IEAPLAZA Homologyregulation of gene expressionHOM03M000112
GO:0010467IEAPLAZA Homologygene expressionHOM03M000112
GO:0006807IEAPLAZA Homologynitrogen compound metabolic processHOM03M000112
GO:0051252IEAPLAZA Homologyregulation of RNA metabolic processHOM03M000112
GO:0051171IEAPLAZA Homologyregulation of nitrogen compound metabolic processHOM03M000112
GO:0019222IEAPLAZA Homologyregulation of metabolic processHOM03M000112
GO:0042221IEAPLAZA Homologyresponse to chemicalHOM03M000112
GO:0019219IEAPLAZA Homologyregulation of nucleobase-containing compound metabolic processHOM03M000112
GO:0034641IEAPLAZA Homologycellular nitrogen compound metabolic processHOM03M000112
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03M000112
GO:0050789IEAPLAZA Homologyregulation of biological processHOM03M000112
GO:0009889IEAPLAZA Homologyregulation of biosynthetic processHOM03M000112
GO:0018130IEAPLAZA Homologyheterocycle biosynthetic processHOM03M000112
GO:0019438IEAPLAZA Homologyaromatic compound biosynthetic processHOM03M000112
GO:0046483IEAPLAZA Homologyheterocycle metabolic processHOM03M000112
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03M000112
GO:0044271IEAPLAZA Homologycellular nitrogen compound biosynthetic processHOM03M000112
GO:0065007IEAPLAZA Homologybiological regulationHOM03M000112
GO:0010556IEAPLAZA Homologyregulation of macromolecule biosynthetic processHOM03M000112
GO:0006139IEAPLAZA Homologynucleobase-containing compound metabolic processHOM03M000112
GO:0032774IEAPLAZA HomologyRNA biosynthetic processHOM03M000112
GO:0009719IEAPLAZA Homologyresponse to endogenous stimulusHOM03M000112
GO:0006725IEAPLAZA Homologycellular aromatic compound metabolic processHOM03M000112
GO:1901576IEAPLAZA Homologyorganic substance biosynthetic processHOM03M000112
GO:0090304IEAPLAZA Homologynucleic acid metabolic processHOM03M000112
GO:0080090IEAPLAZA Homologyregulation of primary metabolic processHOM03M000112
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M000112
GO:0010033IEAPLAZA Homologyresponse to organic substanceHOM03M000112
GO:0009058IEAPLAZA Homologybiosynthetic processHOM03M000112
GO:0009059IEAPLAZA Homologymacromolecule biosynthetic processHOM03M000112
GO:0060255IEAPLAZA Homologyregulation of macromolecule metabolic processHOM03M000112
GO:2000112IEAPLAZA Homologyregulation of cellular macromolecule biosynthetic processHOM03M000112
GO:0031323IEAPLAZA Homologyregulation of cellular metabolic processHOM03M000112
GO:0031326IEAPLAZA Homologyregulation of cellular biosynthetic processHOM03M000112
GO:1901360IEAPLAZA Homologyorganic cyclic compound metabolic processHOM03M000112
GO:1901362IEAPLAZA Homologyorganic cyclic compound biosynthetic processHOM03M000112
GO:0034654IEAPLAZA Homologynucleobase-containing compound biosynthetic processHOM03M000112
GO:0050794IEAPLAZA Homologyregulation of cellular processHOM03M000112
GO:0044249IEAPLAZA Homologycellular biosynthetic processHOM03M000112
GO:0050896IEAPLAZA Homologyresponse to stimulusHOM03M000112

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700ISSUniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7 8
GO:0003677IDA, IEAGene OntologyDNA binding1
GO:0043565IDAUniProtsequence-specific DNA binding1 2 3 4 5 6 7 8
GO:0046983IDA, IEA, UniProtprotein dimerization activity1 2 3 4 5 6 7 8
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03M000112

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634TAS, IDA, ISM, IEA, UniProtnucleus1 2 3 4 5 6 7 8 9 10
GO:0043231IEAPLAZA Homologyintracellular membrane-bounded organelleHOM03M000112
GO:0043226IEAPLAZA HomologyorganelleHOM03M000112
GO:0043227IEAPLAZA Homologymembrane-bounded organelleHOM03M000112
GO:0043229IEAPLAZA Homologyintracellular organelleHOM03M000112

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015300DNA-binding pseudobarrel domain
IPR011525Aux/IAA-ARF-dimerisation
IPR003340B3 DNA binding domain
IPR010525Auxin response factor
IPR003311AUX/IAA protein

Mapman id Description
27.3.4RNA.regulation of transcription.ARF, Auxin Response Factor family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBARF
PlantTFDBARF