PLAZA 3.0 Monocots gene overview : AT1G17420

Gene: AT1G17420 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G17420
Transcript Identifier: AT1G17420.1
Gene Type: Coding gene
Location: 1 : 5977512-5981384 : positive

Family

Gene family: HOM03M000226
(224 genes in 16 species)
specific family
Subfamily: ORTHO03M000043
(50 genes in 14 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: lipoxygenase 3

Curated Summary: LOX3 encode a Lipoxygenase. Lipoxygenases (LOXs) catalyze the oxygenation of fatty acids (FAs).

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Identifiers

Identifier	Name
alias	ATLOX3
alias	lipoxygenase 3
alias	Arabidopsis thaliana lipoxygenase 3
alias	LOX3
uniprot	Q9LNR3

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009611	IEP, RCATAS,	UniProt	response to wounding	1 2 3 4 5 6 7 8 9 10 11
GO:0009644	IEP	UniProt	response to high light intensity	1 2 3 4 5 6 7 8 9
GO:0009753	IEP, RCA,	UniProt	response to jasmonic acid	1 2 3 4 5 6 7 8 9 10
GO:0009620	IEP, RCA,	UniProt	response to fungus	1 2 3 4 5 6 7 8 9 10
GO:0009555	IGI	UniProt	pollen development	1 2 3 4 5 6 7 8 9
GO:0009901	IGI	UniProt	anther dehiscence	1 2 3 4 5 6 7 8 9
GO:0048653	IGI	Gene Ontology	anther development	1
GO:0080086	IGI	UniProt	stamen filament development	1 2 3 4 5 6 7 8 9
GO:0034440	IDA	UniProt	lipid oxidation	1 2 3 4 5 6 7 8 9
GO:0009693	RCA	Gene Ontology	ethylene biosynthetic process	1
GO:0009695	RCA, TAS	Gene Ontology	jasmonic acid biosynthetic process	1 2
GO:0010200	RCA	Gene Ontology	response to chitin	1
GO:0006952	TAS	Gene Ontology	defense response	1
GO:0040007	TAS	Gene Ontology	growth	1
GO:0031408	IEA	UniProt	oxylipin biosynthetic process	1 2 3 4 5 6 7 8
GO:0055114	IEA	InterPro	oxidation-reduction process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016165	IDA, IEA,	UniProt	linoleate 13S-lipoxygenase activity	1 2 3 4 5 6 7 8 9
GO:0005506	IEA	UniProt	iron ion binding	1 2 3 4 5 6 7 8
GO:0005515	IEA	InterPro	protein binding
GO:0016702	IEA	InterPro	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	IEA	InterPro	metal ion binding
GO:0051213	IEA	PLAZA Homology	dioxygenase activity	HOM03M000226
GO:0016701	IEA	PLAZA Homology	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	HOM03M000226

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	IEA, ISM	UniProt	chloroplast	1 2 3 4 5 6 7 8 9

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Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001024	PLAT/LH2 domain
IPR001246	Lipoxygenase, plant
IPR020834	Lipoxygenase, conserved site
IPR013819	Lipoxygenase, C-terminal
IPR008976	Lipase/lipooxygenase, PLAT/LH2
IPR020833	Lipoxygenase, iron binding site
IPR027433	Lipoxygenase, domain 3
IPR000907	Lipoxygenase

Mapman id	Description
17.7.1.2	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase

No SignalP domains detected for this gene.