PLAZA 3.0 Monocots gene overview : AT1G15550

Gene: AT1G15550 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G15550
Transcript Identifier: AT1G15550.1
Gene Type: Coding gene
Location: 1 : 5344569-5346078 : negative

Family

Gene family: HOM03M000022
(1435 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: gibberellin 3-oxidase 1

Curated Summary: Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Deletion of 208 bp from -1016 to -809 (Δ-808) resulted in loss of GA-negative feedback (this sequence, which contains a 43-bp sequence GNFEI, was shown to be sufficient for GA-negative feedback).

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Identifiers

Identifier	Name
alias	GA3OX1
alias	ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1
alias	gibberellin 3-oxidase 1
alias	GA REQUIRING 4
alias	ATGA3OX1
alias	GA4
uniprot	Q39103

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009686	TAS, IMP	UniProt	gibberellin biosynthetic process	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0009739	IEP	Gene Ontology	response to gibberellin stimulus	1
GO:0009639	IEP	Gene Ontology	response to red or far red light	1
GO:0010114	IEP	UniProt	response to red light	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009740	TAS	UniProt	gibberellic acid mediated signaling pathway	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03M000022
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03M000022
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03M000022

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0008134	IPI	Gene Ontology	transcription factor binding	1
GO:0016707	IDA, IMPTAS,	UniProt	gibberellin 3-beta-dioxygenase activity	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0005506	IEA	UniProt	iron ion binding	1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0016706	IEA	InterPro	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0051213	IEA	PLAZA Homology	dioxygenase activity	HOM03M000022
GO:0016705	IEA	PLAZA Homology	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	HOM03M000022
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000022

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	TAS, ISM	UniProt	cytoplasm	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002283	Isopenicillin N synthase
IPR027443	Isopenicillin N synthase-like
IPR005123	Oxoglutarate/iron-dependent dioxygenase
IPR026992	Non-haem dioxygenase N-terminal domain

Mapman id	Description
17.6.1.12	hormone metabolism.gibberelin.synthesis-degradation.GA3 oxidase

No SignalP domains detected for this gene.