PLAZA 3.0 Monocots gene overview : AT1G15480

Gene: AT1G15480 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G15480
Transcript Identifier: AT1G15480.1
Gene Type: Coding gene
Location: 1 : 5318307-5320422 : positive

Family

Gene family: HOM03M000277
(196 genes in 14 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: Tetratricopeptide repeat (TPR)-like superfamily protein

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Identifiers

Identifier	Name
uniprot	Q9XI21

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006302	RCA	Gene Ontology	double-strand break repair	1
GO:0006312	RCA	Gene Ontology	mitotic recombination	1
GO:0007062	RCA	Gene Ontology	sister chromatid cohesion	1
GO:0007129	RCA	Gene Ontology	synapsis	1
GO:0007131	RCA	Gene Ontology	reciprocal meiotic recombination	1
GO:0009560	RCA	Gene Ontology	embryo sac egg cell differentiation	1
GO:0042138	RCA	Gene Ontology	meiotic DNA double-strand break formation	1
GO:0042991	RCA	Gene Ontology	transcription factor import into nucleus	1
GO:0045132	RCA	Gene Ontology	meiotic chromosome segregation	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	ISS	Gene Ontology	DNA binding	1
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005739	IEA, ISM	UniProt	mitochondrion	1 2 3

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002885	Pentatricopeptide repeat
IPR011990	Tetratricopeptide-like helical

Mapman id	Description
27.3.67	RNA.regulation of transcription.putative transcription regulator

No SignalP domains detected for this gene.