PLAZA 3.0 Monocots gene overview : AT1G13710

Gene: AT1G13710 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G13710
Transcript Identifier: AT1G13710.1
Gene Type: Coding gene
Location: 1 : 4702932-4704592 : negative

Family

Gene family: HOM03M000011
(2034 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: cytochrome P450, family 78, subfamily A, polypeptide 5

Curated Summary: Encodes the cytochrome P450 CYP78A5 monooxygenase. Contributes to the generation of a growth-stimulating signal distinct from the classical phytohormones that prevents proliferation arrest, promoting organ growth.

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Identifiers

Identifier	Name
alias	CYP78A5
alias	'cytochrome P450, family 78, subfamily A, polypeptide 5'
alias	KLU
alias	KLUH
uniprot	Q9LMX7

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0008284	IMP	UniProt	positive regulation of cell proliferation	1 2 3 4 5 6 7 8
GO:0035265	IMP	UniProt	organ growth	1 2 3 4 5 6 7 8
GO:0046622	IMP	UniProt	positive regulation of organ growth	1 2 3 4 5 6 7 8
GO:0010075	IGI	UniProt	regulation of meristem growth	1 2 3 4 5 6 7 8
GO:0010338	IGI	UniProt	leaf formation	1 2 3 4 5 6 7 8
GO:0040009	IMP	UniProt	regulation of growth rate	1 2 3 4 5 6 7 8
GO:0048437	IMP	UniProt	floral organ development	1 2 3 4 5 6 7 8
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03M000011
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03M000011
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03M000011

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0019825	ISS	Gene Ontology	oxygen binding	1
GO:0020037	IEA	UniProt	heme binding	1 2 3 4 5 6 7
GO:0005506	IEA	UniProt	iron ion binding	1 2 3 4 5 6 7
GO:0004497	IEA	UniProt	monooxygenase activity	1 2 3 4 5 6 7
GO:0016705	IEA	UniProt	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1 2 3 4 5 6 7
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03M000011
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03M000011
GO:0046914	IEA	PLAZA Homology	transition metal ion binding	HOM03M000011
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000011
GO:0046906	IEA	PLAZA Homology	tetrapyrrole binding	HOM03M000011
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03M000011
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03M000011
GO:0005488	IEA	PLAZA Homology	binding	HOM03M000011
GO:0016491	IEA	PLAZA Homology	oxidoreductase activity	HOM03M000011
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03M000011

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005783	IDA	UniProt	endoplasmic reticulum	1 2 3 4 5 6 7 8
GO:0016021	IEA	UniProt	integral to membrane	1 2 3 4 5 6 7

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001128	Cytochrome P450
IPR002401	Cytochrome P450, E-class, group I
IPR017972	Cytochrome P450, conserved site

Mapman id	Description
26.10	misc.cytochrome P450

No SignalP domains detected for this gene.