Gene: AT1G12820 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G12820
Transcript Identifier
AT1G12820.1
Gene Type
Coding gene
Location
1 : 4368879-4370780 : negative

Family

Gene family
HOM03M000440
(144 genes in 14 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
auxin signaling F-box 3
Curated Summary
Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots.
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Identifiers

Identifier Name
aliasAFB3
aliasauxin signaling F-box 3
uniprotQ9LPW7

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0002237IEP, RCA, UniProtresponse to molecule of bacterial origin1 2 3 4 5 6 7
GO:0010152IGIUniProtpollen maturation1 2 3 4 5 6
GO:0048443IGI, RCA, UniProtstamen development1 2 3 4 5 6 7
GO:0048527IMPUniProtlateral root development1 2 3 4 5 6
GO:0071249IEPUniProtcellular response to nitrate1 2 3 4 5 6
GO:0080022IMPUniProtprimary root development1 2 3 4 5 6
GO:0000394RCAGene OntologyRNA splicing, via endonucleolytic cleavage and ligation1
GO:0007165RCAGene Ontologysignal transduction1
GO:0009086RCAGene Ontologymethionine biosynthetic process1
GO:0010103RCAGene Ontologystomatal complex morphogenesis1
GO:0048573RCAGene Ontologyphotoperiodism, flowering1
GO:0009734ISSUniProtauxin mediated signaling pathway1 2 3 4 5
GO:0006952IEAUniProtdefense response1 2 3 4 5
GO:0016567IEAUniProtprotein ubiquitination1 2 3 4 5

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004842ISSGene Ontologyubiquitin-protein ligase activity1
GO:0010011ISS, IGIUniProtauxin binding1 2 3 4 5 6
GO:0000822ISSUniProtinositol hexakisphosphate binding1 2 3 4 5
GO:0005515IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, ISMUniProtnucleus1 2 3 4 5 6
GO:0019005ISSUniProtSCF ubiquitin ligase complex1 2 3 4 5

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001810F-box domain

Mapman id Description
17.2.2hormone metabolism.auxin.signal transduction
No SignalP domains detected for this gene.