PLAZA 3.0 Monocots gene overview : AT1G12010

Gene: AT1G12010 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G12010
Transcript Identifier: AT1G12010.1
Gene Type: Coding gene
Location: 1 : 4056274-4057670 : positive

Family

Gene family: HOM03M000022
(1435 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Curated Summary: Encodes a protein that appears to have 1-amino-cyclopropane-1-carboxylic acid oxidase activity based on mutant analyses.

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Identifiers

Identifier	Name
uniprot	O65378

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0071398	IEP	UniProt	cellular response to fatty acid	1 2 3 4 5
GO:0009693	IMP	UniProt	ethylene biosynthetic process	1 2 3 4 5
GO:0006952	IEA	UniProt	defense response	1 2 3 4
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03M000022
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03M000022
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03M000022

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0009815	IMP, ISS,	UniProt	1-aminocyclopropane-1-carboxylate oxidase activity	1 2 3 4 5 6
GO:0031418	IEA	UniProt	L-ascorbic acid binding	1 2 3 4
GO:0046872	IEA	UniProt	metal ion binding	1 2 3 4
GO:0016706	IEA	UniProt	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1 2 3 4
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0051213	IEA	PLAZA Homology	dioxygenase activity	HOM03M000022
GO:0016705	IEA	PLAZA Homology	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	HOM03M000022
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000022

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	ISM	Gene Ontology	cytoplasm	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR026992	Non-haem dioxygenase N-terminal domain
IPR005123	Oxoglutarate/iron-dependent dioxygenase
IPR027443	Isopenicillin N synthase-like

Mapman id	Description
17.5.1.2	hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate oxidase

No SignalP domains detected for this gene.