PLAZA 3.0 Monocots gene overview : AT1G10270

Gene: AT1G10270 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G10270
Transcript Identifier: AT1G10270.1
Gene Type: Coding gene
Location: 1 : 3363535-3366276 : positive

Family

Gene family: HOM03M000003
(2428 genes in 16 species)
specific family

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Descriptions

Description: glutamine-rich protein 23

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Identifiers

Identifier	Name
alias	GRP23
alias	glutamine-rich protein 23
uniprot	Q9SY69

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009790	IMP	UniProt	embryo development	1 2 3 4
GO:0051301	IMP, RCA,	UniProt	cell division	1 2 3 4 5
GO:0000398	RCA	Gene Ontology	mRNA splicing, via spliceosome	1
GO:0048825	RCA	Gene Ontology	cotyledon development	1
GO:0006355	IEA	UniProt	regulation of transcription, DNA-dependent	1 2 3
GO:0006351	IEA	UniProt	transcription, DNA-templated	1 2 3

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IPI, IEA	Gene Ontology	protein binding	1
GO:0005488	IEA	PLAZA Homology	binding	HOM03M000003

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISM,	UniProt	nucleus	1 2 3 4 5
GO:0005739	IDA	UniProt	mitochondrion	1 2 3 4

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002885	Pentatricopeptide repeat
IPR019734	Tetratricopeptide repeat
IPR011990	Tetratricopeptide-like helical

Mapman id	Description
35.1.5	not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein

No SignalP domains detected for this gene.