Gene: AT1G09340 (Arabidopsis thaliana)

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Gene Identifier
AT1G09340
Transcript Identifier
AT1G09340.1
Gene Type
Coding gene
Location
1 : 3015473-3018035 : positive

Family

Gene family
HOM03M002207
(38 genes in 16 species)
specific family
Subfamily
ORTHO03M006187
(6 genes in 6 species)
specific family

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Descriptions

Description
chloroplast RNA binding
Curated Summary
Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.
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Identifiers

Identifier Name
aliasHIP1.3
aliasCHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA
aliasCRB
aliaschloroplast RNA binding
aliasheteroglycan-interacting protein 1.3
aliasCSP41B
uniprotQ9SA52

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009611IEPUniProtresponse to wounding1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0042631IEPUniProtcellular response to water deprivation1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0009409IEP, RCA, UniProtresponse to cold1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
GO:0042742IEP, RCA, UniProtdefense response to bacterium1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
GO:0007623IMP, IEPUniProtcircadian rhythm1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
GO:0009658IMPUniProtchloroplast organization1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0006364IGI, RCA, UniProtrRNA processing1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
GO:0032544IMPUniProtplastid translation1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0045727IMPUniProtpositive regulation of translation1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0045893IMP, RCA, UniProtpositive regulation of transcription, DNA-dependent1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
GO:0005996IMPUniProtmonosaccharide metabolic process1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0000165RCAGene OntologyMAPK cascade1
GO:0006098RCAGene Ontologypentose-phosphate shunt1
GO:0006612RCAGene Ontologyprotein targeting to membrane1
GO:0006636RCAGene Ontologyunsaturated fatty acid biosynthetic process1
GO:0009595RCAGene Ontologydetection of biotic stimulus1
GO:0009637RCAGene Ontologyresponse to blue light1
GO:0009657RCAGene Ontologyplastid organization1
GO:0009697RCAGene Ontologysalicylic acid biosynthetic process1
GO:0009814RCAGene Ontologydefense response, incompatible interaction1
GO:0009853RCAGene Ontologyphotorespiration1
GO:0009862RCAGene Ontologysystemic acquired resistance, salicylic acid mediated signaling pathway1
GO:0009867RCAGene Ontologyjasmonic acid mediated signaling pathway1
GO:0009902RCAGene Ontologychloroplast relocation1
GO:0009965RCAGene Ontologyleaf morphogenesis1
GO:0010027RCAGene Ontologythylakoid membrane organization1
GO:0010114RCAGene Ontologyresponse to red light1
GO:0010200RCAGene Ontologyresponse to chitin1
GO:0010207RCAGene Ontologyphotosystem II assembly1
GO:0010218RCAGene Ontologyresponse to far red light1
GO:0010310RCAGene Ontologyregulation of hydrogen peroxide metabolic process1
GO:0010363RCAGene Ontologyregulation of plant-type hypersensitive response1
GO:0015995RCAGene Ontologychlorophyll biosynthetic process1
GO:0016117RCAGene Ontologycarotenoid biosynthetic process1
GO:0019288RCAGene Ontologyisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1
GO:0019684RCAGene Ontologyphotosynthesis, light reaction1
GO:0030154RCAGene Ontologycell differentiation1
GO:0031348RCAGene Ontologynegative regulation of defense response1
GO:0034660RCAGene OntologyncRNA metabolic process1
GO:0035304RCAGene Ontologyregulation of protein dephosphorylation1
GO:0042793RCAGene Ontologytranscription from plastid promoter1
GO:0043085RCAGene Ontologypositive regulation of catalytic activity1
GO:0043900RCAGene Ontologyregulation of multi-organism process1
GO:0050832RCAGene Ontologydefense response to fungus1
GO:0000272IEAUniProtpolysaccharide catabolic process1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0044237IEAPLAZA Homologycellular metabolic processHOM03M002207

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723IDAUniProtRNA binding1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0005515IPIGene Ontologyprotein binding1
GO:0010297IDAUniProtheteropolysaccharide binding1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0019843IEAUniProtrRNA binding1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0050662IEAPLAZA Homologycoenzyme bindingHOM03M002207
GO:0003824IEAPLAZA Homologycatalytic activityHOM03M002207

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005794ISMGene OntologyGolgi apparatus1
GO:0009941IDAUniProtchloroplast envelope1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0009507IDAGene Ontologychloroplast1
GO:0005773IDAUniProtvacuole1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0009570IDAGene Ontologychloroplast stroma1
GO:0010287IDAUniProtplastoglobule1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0010319IDAUniProtstromule1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0016020IDAUniProtmembrane1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0005777IDAUniProtperoxisome1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0005840IDAUniProtribosome1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0048046IDAUniProtapoplast1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0009506IDAUniProtplasmodesma1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR016040NAD(P)-binding domain

Mapman id Description
35.2not assigned.unknown
No SignalP domains detected for this gene.