Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene: AT1G09140 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT1G09140
- Transcript Identifier
- AT1G09140.1
- Gene Type
- Coding gene
- Location
- 1 : 2942887-2945818 : negative
Family
- Gene family
- Subfamily
Descriptions
- Description
-
SERINE-ARGININE PROTEIN 30
- Curated Summary
-
Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
Identifiers
| Identifier | Name |
|---|---|
| alias | At-SR30 |
| alias | Serine/Arginine-Rich Protein Splicing Factor 30 |
| alias | SERINE-ARGININE PROTEIN 30 |
| alias | ATSRP30.1 |
| alias | ATSRP30 |
| alias | ATSRP30.2 |
| alias | SR30 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0006376 | IMP | Gene Ontology | mRNA splice site selection | 1 |
| GO:0048024 | TAS | Gene Ontology | regulation of mRNA splicing, via spliceosome | 1 |
| GO:0000398 | RCA | Gene Ontology | mRNA splicing, via spliceosome | 1 |
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0003723 | ISS | Gene Ontology | RNA binding | 1 |
| GO:0003729 | ISS | Gene Ontology | mRNA binding | 1 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:1901265 | IEA | PLAZA Homology | nucleoside phosphate binding | HOM03M001353 |
Cellular Component
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | 1 |
| GO:0005681 | NAS | Gene Ontology | spliceosomal complex | 1 |
| GO:0035061 | IDA | Gene Ontology | interchromatin granule | 1 |
| GO:0016607 | IDA | Gene Ontology | nuclear speck | 1 |
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
| Mapman id | Description |
|---|---|
| 27.1.1 | RNA.processing.splicing |
No SignalP domains detected for this gene.