Gene: AT1G09140 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G09140
Transcript Identifier
AT1G09140.1
Gene Type
Coding gene
Location
1 : 2942887-2945818 : negative

Family

Gene family
HOM03M001353
(55 genes in 16 species)
specific family
Subfamily
ORTHO03M004536
(7 genes in 7 species)
specific family

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Descriptions

Description
SERINE-ARGININE PROTEIN 30
Curated Summary
Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
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Identifiers

Identifier Name
aliasAt-SR30
aliasSerine/Arginine-Rich Protein Splicing Factor 30
aliasSERINE-ARGININE PROTEIN 30
aliasATSRP30.1
aliasATSRP30
aliasATSRP30.2
aliasSR30

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006376IMPGene OntologymRNA splice site selection1
GO:0048024TASGene Ontologyregulation of mRNA splicing, via spliceosome1
GO:0000398RCAGene OntologymRNA splicing, via spliceosome1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723ISSGene OntologyRNA binding1
GO:0003729ISSGene OntologymRNA binding1
GO:0005515IPIGene Ontologyprotein binding1
GO:0000166IEAInterPronucleotide binding
GO:0003676IEAInterPronucleic acid binding
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03M001353

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1
GO:0005681NASGene Ontologyspliceosomal complex1
GO:0035061IDAGene Ontologyinterchromatin granule1
GO:0016607IDAGene Ontologynuclear speck1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000504RNA recognition motif domain
IPR012677Nucleotide-binding, alpha-beta plait

Mapman id Description
27.1.1RNA.processing.splicing
No SignalP domains detected for this gene.