Gene: AT1G08830 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G08830
Transcript Identifier
AT1G08830.1
Gene Type
Coding gene
Location
1 : 2827700-2829053 : positive

Family

Gene family
HOM03M001153
(63 genes in 15 species)
specific family
Subfamily
ORTHO03M011177
(4 genes in 4 species)
specific family

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Descriptions

Description
copper/zinc superoxide dismutase 1
Curated Summary
Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress. Activation of CSD1 in the cytoplasm involves both a CCS-dependent and -independent pathway.
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Identifiers

Identifier Name
aliasCSD1
aliascopper/zinc superoxide dismutase 1
uniprotP24704

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0019430IBA, IC, UniProtremoval of superoxide radicals1 2 3 4 5 6 7 8 9 10 11 12
GO:0006979IEP, TASGene Ontologyresponse to oxidative stress1 2
GO:0046688IEPGene Ontologyresponse to copper ion1
GO:0010039IEPUniProtresponse to iron ion1 2 3 4 5 6 7 8 9 10 11
GO:0034599IEPGene Ontologycellular response to oxidative stress1
GO:0035195IEPUniProtgene silencing by miRNA1 2 3 4 5 6 7 8 9 10 11
GO:0071472IEPUniProtcellular response to salt stress1 2 3 4 5 6 7 8 9 10 11
GO:0071329IEPUniProtcellular response to sucrose stimulus1 2 3 4 5 6 7 8 9 10 11
GO:0009651IEP, RCAGene Ontologyresponse to salt stress1 2
GO:0010193IEPGene Ontologyresponse to ozone1
GO:0042742IEPUniProtdefense response to bacterium1 2 3 4 5 6 7 8 9 10 11
GO:0071280IEPUniProtcellular response to copper ion1 2 3 4 5 6 7 8 9 10 11
GO:0006094RCAGene Ontologygluconeogenesis1
GO:0006096RCAGene Ontologyglycolysis1
GO:0046686RCAGene Ontologyresponse to cadmium ion1
GO:0071457IEPUniProtcellular response to ozone1 2 3 4 5 6 7 8 9 10 11
GO:0071484IEPUniProtcellular response to light intensity1 2 3 4 5 6 7 8 9 10 11
GO:0071493IEPUniProtcellular response to UV-B1 2 3 4 5 6 7 8 9 10 11
GO:0006801IEAInterProsuperoxide metabolic process
GO:0055114IEAInterProoxidation-reduction process

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005507IBAUniProtcopper ion binding1 2 3 4 5 6 7 8 9 10 11
GO:0008270IBAUniProtzinc ion binding1 2 3 4 5 6 7 8 9 10 11
GO:0005515IPIGene Ontologyprotein binding1
GO:0004784TAS, IDA, IEA, UniProtsuperoxide dismutase activity1 2 3 4 5 6 7 8 9 10 11 12
GO:0046872IEAInterPrometal ion binding
GO:0016721IEAPLAZA Homologyoxidoreductase activity, acting on superoxide radicals as acceptorHOM03M001153

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005576IBAUniProtextracellular region1 2 3 4 5 6 7 8 9 10 11
GO:0005737ISM, NASGene Ontologycytoplasm1 2
GO:0005829IDA, TAS, UniProtcytosol1 2 3 4 5 6 7 8 9 10 11 12
GO:0005634IDAUniProtnucleus1 2 3 4 5 6 7 8 9 10 11

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR024134Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone
IPR001424Superoxide dismutase, copper/zinc binding domain
IPR018152Superoxide dismutase, copper/zinc, binding site

Mapman id Description
21.6redox.dismutases and catalases
No SignalP domains detected for this gene.