PLAZA 3.0 Monocots gene overview : AT1G08070

Gene: AT1G08070 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G08070
Transcript Identifier: AT1G08070.1
Gene Type: Coding gene
Location: 1 : 2514374-2516599 : negative

Family

Gene family: HOM03M000001
(3285 genes in 14 species)
specific family

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Descriptions

Description: Tetratricopeptide repeat (TPR)-like superfamily protein

Curated Summary: Encodes a chloroplast RNA editing factor.

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Identifiers

Identifier	Name
alias	OTP82
alias	ORGANELLE TRANSCRIPT PROCESSING 82
alias	EMBRYO DEFECTIVE 3102
alias	EMB3102
uniprot	Q9LN01

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0031425	IMP	UniProt	chloroplast RNA processing	1 2 3 4

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0005488	IEA	PLAZA Homology	binding	HOM03M000001

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	ISM	Gene Ontology	chloroplast	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002885	Pentatricopeptide repeat
IPR011990	Tetratricopeptide-like helical

Mapman id	Description
35.1.5	not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein

No SignalP domains detected for this gene.