PLAZA 3.0 Monocots gene overview : AT1G06640

Gene: AT1G06640 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G06640
Transcript Identifier: AT1G06640.1
Gene Type: Coding gene
Location: 1 : 2032366-2033775 : positive

Family

Gene family: HOM03M000022
(1435 genes in 16 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Loading...please wait

Descriptions

Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Curated Summary: encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase

Show more...

Identifiers

Identifier	Name
uniprot	Q9C5K7

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0016126	RCA	Gene Ontology	sterol biosynthetic process	1
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03M000022
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03M000022
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03M000022

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016706	IEA, ISS	UniProt	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1 2 3
GO:0046872	IEA	UniProt	metal ion binding	1 2
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0051213	IEA	PLAZA Homology	dioxygenase activity	HOM03M000022
GO:0016705	IEA	PLAZA Homology	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	HOM03M000022
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000022

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	ISM	Gene Ontology	cytoplasm	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR005123	Oxoglutarate/iron-dependent dioxygenase
IPR026992	Non-haem dioxygenase N-terminal domain
IPR027443	Isopenicillin N synthase-like

Mapman id	Description
21.2	redox.ascorbate and glutathione

No SignalP domains detected for this gene.