PLAZA 3.0 Monocots gene overview : AT1G06550

Gene: AT1G06550 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G06550
Transcript Identifier: AT1G06550.1
Gene Type: Coding gene
Location: 1 : 2003834-2006564 : negative

Family

Gene family: HOM03M000509
(126 genes in 16 species)
specific family
Subfamily: ORTHO03M006069
(6 genes in 6 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: ATP-dependent caseinolytic (Clp) protease/crotonase family protein

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Identifiers

Identifier	Name
uniprot	Q9SHJ8

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006635	ISS	Gene Ontology	fatty acid beta-oxidation	1
GO:0080167	IEP	UniProt	response to karrikin	1 2 3
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03M000509

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003860	ISS	Gene Ontology	3-hydroxyisobutyryl-CoA hydrolase activity	1
GO:0016787	IEA	UniProt	hydrolase activity	1 2
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000509

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	ISM	Gene Ontology	cytoplasm	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

No InterPro domains detected for this gene.

Mapman id	Description
11.9.4.3	lipid metabolism.lipid degradation.beta-oxidation.enoyl CoA hydratase
13.2.6.3	amino acid metabolism.degradation.aromatic aa.tryptophan

No SignalP domains detected for this gene.