PLAZA 3.0 Monocots gene overview : AT1G06140

Gene: AT1G06140 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G06140
Transcript Identifier: AT1G06140.1
Gene Type: Coding gene
Location: 1 : 1864796-1866472 : positive

Family

Gene family: HOM03M000001
(3285 genes in 14 species)
specific family
Duplication type: Tandem duplicate

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Descriptions

Description: Pentatricopeptide repeat (PPR) superfamily protein

Curated Summary: Encodes MEF3 (mitochondrial editing factor 3), a PPR (pentatricopeptide repeat) protein of the E domain subclass. Functions in mitochondrial RNA editing.

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Identifiers

Identifier	Name
alias	MEF3
alias	mitochondrial editing factor 3
uniprot	Q9LND4

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0080156	IMP	UniProt	mitochondrial mRNA modification	1 2 3

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0005488	IEA	PLAZA Homology	binding	HOM03M000001

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005739	IEA, ISM	UniProt	mitochondrion	1 2 3

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002885	Pentatricopeptide repeat
IPR011990	Tetratricopeptide-like helical

Mapman id	Description
35.1.5	not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein

No SignalP domains detected for this gene.