Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene: AT1G04950 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT1G04950
- Transcript Identifier
- AT1G04950.1
- Gene Type
- Coding gene
- Location
- 1 : 1403606-1407184 : negative
Family
- Gene family
- Subfamily
Descriptions
- Description
-
TATA BOX ASSOCIATED FACTOR II 59
- Curated Summary
-
Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.
Identifiers
| Identifier | Name |
|---|---|
| alias | TAF6 |
| alias | EMBRYO DEFECTIVE 2781 |
| alias | ATTAF6 |
| alias | TAFII59 |
| alias | TATA BOX ASSOCIATED FACTOR II 59 |
| alias | TBP-associated factor 6 |
| alias | EMB2781 |
| uniprot | Q9MAU3 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0006352 | IEA, ISS | UniProt | DNA-dependent transcription, initiation | 1 2 3 4 5 6 7 |
| GO:0009860 | IMP | UniProt | pollen tube growth | 1 2 3 4 5 6 7 |
| GO:0000394 | RCA | Gene Ontology | RNA splicing, via endonucleolytic cleavage and ligation | 1 |
| GO:0006366 | RCA | Gene Ontology | transcription from RNA polymerase II promoter | 1 |
| GO:0010048 | RCA | Gene Ontology | vernalization response | 1 |
| GO:0048573 | RCA | Gene Ontology | photoperiodism, flowering | 1 |
| GO:0051090 | IEA | UniProt | regulation of sequence-specific DNA binding transcription factor activity | 1 2 3 4 5 6 |
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0046982 | IEA | InterPro | protein heterodimerization activity | |
| GO:0005488 | IEA | InterPro | binding |
Cellular Component
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
| Mapman id | Description |
|---|---|
| 27.3.67 | RNA.regulation of transcription.putative transcription regulator |
No SignalP domains detected for this gene.