Gene: AT1G04410 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT1G04410
- Transcript Identifier
- AT1G04410.1
- Gene Type
- Coding gene
- Location
- 1 : 1189418-1191267 : negative
Family
- Gene family
- Duplication type
- Block duplicate
Descriptions
- Description
-
Lactate/malate dehydrogenase family protein
- Curated Summary
-
predicted to encode a cytosolic malate dehydrogenase.
Identifiers
Identifier | Name |
---|---|
alias | c-NAD-MDH1 |
alias | cytosolic-NAD-dependent malate dehydrogenase 1 |
uniprot | P93819 |
Toolbox
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- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
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Biological Process
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0046686 | IEP, RCA, | UniProt | response to cadmium ion | 1 2 3 4 5 6 |
GO:0009651 | IEP, RCA, | UniProt | response to salt stress | 1 2 3 4 5 6 |
GO:0010043 | IEP | UniProt | response to zinc ion | 1 2 3 4 5 |
GO:0006094 | RCA | Gene Ontology | gluconeogenesis | 1 |
GO:0006096 | RCA | Gene Ontology | glycolysis | 1 |
GO:0006833 | RCA | Gene Ontology | water transport | 1 |
GO:0006972 | RCA | Gene Ontology | hyperosmotic response | 1 |
GO:0007030 | RCA | Gene Ontology | Golgi organization | 1 |
GO:0009266 | RCA | Gene Ontology | response to temperature stimulus | 1 |
GO:0044262 | IEA | UniProt | cellular carbohydrate metabolic process | 1 2 3 4 |
GO:0006108 | IEA | UniProt | malate metabolic process | 1 2 3 4 |
GO:0006099 | IEA | UniProt | tricarboxylic acid cycle | 1 2 3 4 |
GO:0005975 | IEA | InterPro | carbohydrate metabolic process | |
GO:0055114 | IEA | InterPro | oxidation-reduction process |
Molecular Function
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0016615 | ISS, IEA | Gene Ontology | malate dehydrogenase activity | 1 |
GO:0030060 | IEA | UniProt | L-malate dehydrogenase activity | 1 2 3 4 |
GO:0016491 | IEA | InterPro | oxidoreductase activity | |
GO:0003824 | IEA | InterPro | catalytic activity | |
GO:0016616 | IEA | InterPro | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
Cellular Component
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0005737 | ISM | Gene Ontology | cytoplasm | 1 |
GO:0005634 | IDA | UniProt | nucleus | 1 2 3 4 5 |
GO:0005773 | IDA | Gene Ontology | vacuole | 1 |
GO:0009570 | IDA | UniProt | chloroplast stroma | 1 2 3 4 5 |
GO:0005774 | IDA | UniProt | vacuolar membrane | 1 2 3 4 5 |
GO:0005886 | IDA | UniProt | plasma membrane | 1 2 3 4 5 |
GO:0016020 | IDA | Gene Ontology | membrane | 1 |
GO:0009507 | IDA | Gene Ontology | chloroplast | 1 |
GO:0048046 | IDA | UniProt | apoplast | 1 2 3 4 5 |
GO:0005829 | RCA | Gene Ontology | cytosol | 1 |
GO:0009506 | IDA | UniProt | plasmodesma | 1 2 3 4 5 |
GO:0005794 | RCA | Gene Ontology | Golgi apparatus | 1 |
Color Legend
Experimental Evidence |
Electronic Evidence |
Computational Reviewed Evidence |
InterPro | Description |
---|---|
IPR016040 | NAD(P)-binding domain |
IPR015955 | Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal |
IPR011274 | Malate dehydrogenase, NAD-dependent, cytosolic |
IPR010945 | Malate dehydrogenase, type 2 |
IPR001236 | Lactate/malate dehydrogenase, N-terminal |
IPR001252 | Malate dehydrogenase, active site |
IPR022383 | Lactate/malate dehydrogenase, C-terminal |
Mapman id | Description |
---|---|
8.2.9 | TCA / org transformation.other organic acid transformatons.cyt MDH |
No SignalP domains detected for this gene.