Gene: AT1G04250 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G04250
Transcript Identifier
AT1G04250.1
Gene Type
Coding gene
Location
1 : 1136382-1138340 : positive

Family

Gene family
HOM03M000126
(378 genes in 14 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

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Descriptions

Description
AUX/IAA transcriptional regulator family protein
Curated Summary
Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.
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Identifiers

Identifier Name
aliasAXR3
aliasIAA17
aliasindole-3-acetic acid inducible 17
aliasAUXIN RESISTANT 3
uniprotP93830

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009734TASUniProtauxin mediated signaling pathway1 2 3 4 5 6 7 8 9
GO:0009733IEP, IMP, TASGene Ontologyresponse to auxin1 2 3
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7 8
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0010468IEAPLAZA Homologyregulation of gene expressionHOM03M000126
GO:0010467IEAPLAZA Homologygene expressionHOM03M000126
GO:0006807IEAPLAZA Homologynitrogen compound metabolic processHOM03M000126
GO:0051252IEAPLAZA Homologyregulation of RNA metabolic processHOM03M000126
GO:0051171IEAPLAZA Homologyregulation of nitrogen compound metabolic processHOM03M000126
GO:0019222IEAPLAZA Homologyregulation of metabolic processHOM03M000126
GO:0019219IEAPLAZA Homologyregulation of nucleobase-containing compound metabolic processHOM03M000126
GO:0034641IEAPLAZA Homologycellular nitrogen compound metabolic processHOM03M000126
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03M000126
GO:0050789IEAPLAZA Homologyregulation of biological processHOM03M000126
GO:0009889IEAPLAZA Homologyregulation of biosynthetic processHOM03M000126
GO:0018130IEAPLAZA Homologyheterocycle biosynthetic processHOM03M000126
GO:0019438IEAPLAZA Homologyaromatic compound biosynthetic processHOM03M000126
GO:0046483IEAPLAZA Homologyheterocycle metabolic processHOM03M000126
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03M000126
GO:0044271IEAPLAZA Homologycellular nitrogen compound biosynthetic processHOM03M000126
GO:0065007IEAPLAZA Homologybiological regulationHOM03M000126
GO:0010556IEAPLAZA Homologyregulation of macromolecule biosynthetic processHOM03M000126
GO:0006139IEAPLAZA Homologynucleobase-containing compound metabolic processHOM03M000126
GO:0032774IEAPLAZA HomologyRNA biosynthetic processHOM03M000126
GO:0006725IEAPLAZA Homologycellular aromatic compound metabolic processHOM03M000126
GO:1901576IEAPLAZA Homologyorganic substance biosynthetic processHOM03M000126
GO:0090304IEAPLAZA Homologynucleic acid metabolic processHOM03M000126
GO:0080090IEAPLAZA Homologyregulation of primary metabolic processHOM03M000126
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M000126
GO:0009058IEAPLAZA Homologybiosynthetic processHOM03M000126
GO:0009059IEAPLAZA Homologymacromolecule biosynthetic processHOM03M000126
GO:0060255IEAPLAZA Homologyregulation of macromolecule metabolic processHOM03M000126
GO:2000112IEAPLAZA Homologyregulation of cellular macromolecule biosynthetic processHOM03M000126
GO:0031323IEAPLAZA Homologyregulation of cellular metabolic processHOM03M000126
GO:0031326IEAPLAZA Homologyregulation of cellular biosynthetic processHOM03M000126
GO:1901360IEAPLAZA Homologyorganic cyclic compound metabolic processHOM03M000126
GO:1901362IEAPLAZA Homologyorganic cyclic compound biosynthetic processHOM03M000126
GO:0034654IEAPLAZA Homologynucleobase-containing compound biosynthetic processHOM03M000126
GO:0050794IEAPLAZA Homologyregulation of cellular processHOM03M000126
GO:0044249IEAPLAZA Homologycellular biosynthetic processHOM03M000126

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700ISS, NAS, UniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7 8 9 10
GO:0005515IPIGene Ontologyprotein binding1
GO:0042802IPIGene Ontologyidentical protein binding1
GO:0046983IEAInterProprotein dimerization activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMIEA, UniProtnucleus1 2 3 4 5 6 7 8 9 10
GO:0043231IEAPLAZA Homologyintracellular membrane-bounded organelleHOM03M000126
GO:0043226IEAPLAZA HomologyorganelleHOM03M000126
GO:0043227IEAPLAZA Homologymembrane-bounded organelleHOM03M000126
GO:0043229IEAPLAZA Homologyintracellular organelleHOM03M000126
GO:0044424IEAPLAZA Homologyintracellular partHOM03M000126

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011525Aux/IAA-ARF-dimerisation
IPR003311AUX/IAA protein

Mapman id Description
27.3.40RNA.regulation of transcription.Aux/IAA family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBAUX/IAA