PLAZA 3.0 Monocots gene overview : AT1G02400

Gene: AT1G02400 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G02400
Transcript Identifier: AT1G02400.1
Gene Type: Coding gene
Location: 1 : 486964-489391 : positive

Family

Gene family: HOM03M000022
(1435 genes in 16 species)
specific family

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Descriptions

Description: gibberellin 2-oxidase 6

Curated Summary: Encodes a gibberellin 2-oxidase that acts on C19 gibberellins but not C20 gibberellins.

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Identifiers

Identifier	Name
alias	GA2OX6
alias	ATGA2OX4
alias	Arabidopsis thaliana gibberellin 2-oxidase 4
alias	DTA1
alias	DOWNSTREAM TARGET OF AGL15 1
alias	gibberellin 2-oxidase 6
alias	ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6
alias	ATGA2OX6
uniprot	Q9FZ21

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009639	IEP	UniProt	response to red or far red light	1 2 3 4 5
GO:0045487	IDA	UniProt	gibberellin catabolic process	1 2 3 4 5
GO:0010286	RCA	Gene Ontology	heat acclimation	1
GO:0009686	IEA	UniProt	gibberellin biosynthetic process	1 2 3 4
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03M000022
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03M000022
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03M000022

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0052634	IDA	UniProt	C-19 gibberellin 2-beta-dioxygenase activity	1 2 3 4 5
GO:0052635	IDA	Gene Ontology	C-20 gibberellin 2-beta-dioxygenase activity	1
GO:0046872	IEA	UniProt	metal ion binding	1 2 3 4
GO:0016706	IEA	InterPro	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0051213	IEA	PLAZA Homology	dioxygenase activity	HOM03M000022
GO:0016705	IEA	PLAZA Homology	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	HOM03M000022
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000022

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	ISM	Gene Ontology	cytoplasm	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR027443	Isopenicillin N synthase-like
IPR026992	Non-haem dioxygenase N-terminal domain
IPR005123	Oxoglutarate/iron-dependent dioxygenase

Mapman id	Description
17.6.1.13	hormone metabolism.gibberelin.synthesis-degradation.GA2 oxidase

No SignalP domains detected for this gene.