Anchorpoints

Gene id
PT01G47090
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G56130Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. Transducin/WD40 repeat-like superfamily protein TEX1; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G67320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00012G00820No description available.supercontig_12+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL07G066060Guanine nucleotide-binding protein subunit beta-like protein (AHRD V1 **-* GBLP_DICDI)%3B contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat%2C regionch07-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV19G06290name=GSVIVG01014763001;chr19+View


Download

Gene id
Species
Description
Chromosome
Strand