Anchorpoints

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G56290peroxin 5 peroxin 5 (PEX5); CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Encodes the peroxisomal targeting signal type 1 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS1 consensus sequence (tripeptide SKL or a conserved variant) at the extreme C terminus. The protein has several domains, including C-terminal tetratricopeptide repeat motifs which act in binding the C-terminal 'SKL' targeting signal. The mechanism of transport has been worked out in other organisms: The receptor recognizes and binds cytosolic PTS1-containing proteins. The PEX5-PTS1 complex binds a PEX14/PEX13 receptor complex at the peroxisome membrane and is translocated into the peroxisome matrix in a process dependent on PEX2,PEX10, and PEX12. In the peroxisome matrix, PEX5 releases its cargo and is recycled to the cytosol in a process dependent on PEX1, PEX4, PEX6 and PEX22. It is also involved, in conjunction with PEX7, in PTS1- and PTS2-dependent peroxisomal protein import. RNAi experiments suggest that PEX5 is necessary for the maintenance of both glyoxysomal and leaf peroxisomal functions.5+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD3G39510No description available.Bd3+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00012G00530No description available.supercontig_12-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_08G37440No description available.Chr08+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G47310No description available.Chr01+View
PT11G17000No description available.Chr11+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB07G028340No description available.chr_7-View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI006G19790No description available.scaffold_6+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G005650Peroxisomal targeting signal 1 receptor (AHRD V1 **** Q9ZTK6_TOBAC)%3B contains Interpro domain(s) IPR011990 Tetratricopeptide-like helicalch10-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM01G31550No description available.1+View
ZM04G31960No description available.4+View


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Description
Chromosome
Strand