Functional Clusters   top

Cluster information

Cluster identifier
CH_ath_94
Species
Arabidopsis thaliana
Chromosome
1
E-value
0.000757075
Data type
MapMan
Data identifier
34
Data description
transport

Statistics

Gene family Num genes total Num genes species Num genes cluster Num species
HOM03M00005472551116
HOM03M000972749214
HOM03M00004091345116
HOM03M000029106553415
HOM03M000778906114

Gene information

In cluster Gene id Description Gene type Gene family
V AT1G71870MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G29140.1); Has 10234 Blast hits to 10086 proteins in 1918 species: Archae - 185; Bacteria - 7350; Metazoa - 148; Fungi - 328; Plants - 1302; Viruses - 0; Other Eukaryotes - 921 (source: NCBI BLink).Coding geneHOM03M000054 orphan gene
V AT1G71880sucrose-proton symporter 1Coding geneHOM03M000972 orphan gene
V AT1G71890Major facilitator superfamily proteinCoding geneHOM03M000972 orphan gene
X AT1G71900Magnesium transporter NIPA2Coding geneHOM03M000520 ORTHO03M008142
X AT1G71910unknown protein; Has 28 Blast hits to 28 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM03M009393 orphan gene
X AT1G71920Histidinol-phosphate aminotransferaseCoding geneHOM03M003905 orphan gene
X AT1G71930CUP-SHAPED COTYLEDONCoding geneHOM03M000023 orphan gene
X AT1G71940Uncharacterized membrane protein At4g09580Coding geneHOM03M001714 orphan gene
X AT1G71950Proteinase inhibitor, propeptide; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: negative regulation of catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor, propeptide (InterPro:IPR009020), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259), Peptidase S8, subtilisin-related (InterPro:IPR015500); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G11940.1); Has 894 Blast hits to 886 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 894; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM03M002339 orphan gene
V AT1G71960ATP-binding casette family G25 (ABCG25); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ATP-binding cassette 14 (TAIR:AT1G31770.1); Has 400795 Blast hits to 363827 proteins in 4147 species: Archae - 6947; Bacteria - 316897; Metazoa - 8938; Fungi - 6866; Plants - 5594; Viruses - 13; Other Eukaryotes - 55540 (source: NCBI BLink).Coding geneHOM03M000040 orphan gene
X AT1G71970unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22680.1); Has 58 Blast hits to 58 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).Coding geneHOM03M008743 orphan gene
X AT1G71980Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G22670.1); Has 15658 Blast hits to 9675 proteins in 411 species: Archae - 0; Bacteria - 271; Metazoa - 3014; Fungi - 1211; Plants - 4865; Viruses - 29; Other Eukaryotes - 6268 (source: NCBI BLink).Coding geneHOM03M001200 ORTHO03M004212
X AT1G71990Alpha-(1,4)-fucosyltransferaseCoding geneHOM03M003710 orphan gene
X AT1G72000Plant neutral invertase family proteinCoding geneHOM03M000468 orphan gene
X AT1G72010Transcription factor TCP22Coding geneHOM03M000325 orphan gene
X AT1G72020unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM03M005625 orphan gene
X AT1G72030Acyl-CoA N-acyltransferases (NAT) superfamily proteinCoding geneHOM03M004207 orphan gene
X AT1G72040P-loop containing nucleoside triphosphate hydrolases superfamily proteinCoding geneHOM03M002772 ORTHO03M010757
X AT1G72050Endothelial zinc finger protein induced by tumor necrosis factor alphaCoding geneHOM03M003193 orphan gene
X AT1G72060serine-type endopeptidase inhibitorsCoding geneHOM03M007881 orphan gene
X AT1G72070Chaperone DnaJ-domain superfamily proteinCoding geneHOM03M002394 orphan gene
X AT1G72080unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding geneorphan geneorphan gene
X AT1G72090tRNA methylthiotransferaseCoding geneHOM03M004669 orphan gene
X AT1G72100late embryogenesis abundant domain-containing protein / LEA domain-containing protein; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT1G22600.1); Has 5957 Blast hits to 3336 proteins in 883 species: Archae - 38; Bacteria - 2417; Metazoa - 675; Fungi - 389; Plants - 1426; Viruses - 20; Other Eukaryotes - 992 (source: NCBI BLink).Coding geneHOM03M005561 ORTHO03M005344
X AT1G72110O-acyltransferase (WSD1-like) family proteinCoding geneHOM03M000587 orphan gene
V AT1G72120Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G72125.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding geneHOM03M000029 ORTHO03M002687
V AT1G72125Probable peptide/nitrate transporterCoding geneHOM03M000029 orphan gene
V AT1G72130Major facilitator superfamily proteinCoding geneHOM03M000029 orphan gene
V AT1G72131No description available.Pseudo gene
V AT1G72140Major facilitator superfamily proteinCoding geneHOM03M000029 ORTHO03M018625
X AT1G72141unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding geneorphan geneorphan gene
V AT1G72150PATELLIN 1Coding geneHOM03M000778 orphan gene