Functional Clusters   top

Cluster information

Cluster identifier
CH_ath_87
Species
Arabidopsis thaliana
Chromosome
3
E-value
0.000372634
Data type
MapMan
Data identifier
34
Data description
transport

Statistics

Gene family Num genes total Num genes species Num genes cluster Num species
HOM03M00048413012716
HOM03M00029818412116
HOM03M000029106553115
HOM03M00020125120114

Gene information

In cluster Gene id Description Gene type Gene family
V AT3G47730ATP-binding cassette A2 (ABCA2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 11 (TAIR:AT5G61730.1); Has 380556 Blast hits to 352092 proteins in 4023 species: Archae - 7135; Bacteria - 302205; Metazoa - 7915; Fungi - 4655; Plants - 4588; Viruses - 7; Other Eukaryotes - 54051 (source: NCBI BLink).Coding geneHOM03M000484 orphan gene
V AT3G47740ABC2 homolog 2Coding geneHOM03M000484 orphan gene
V AT3G47750ATP binding cassette subfamily A4Coding geneHOM03M000484 orphan gene
V AT3G47760ABC2 homolog 4 (ATH4); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATP binding cassette subfamily A4 (TAIR:AT3G47750.1); Has 393805 Blast hits to 360874 proteins in 4063 species: Archae - 7254; Bacteria - 312503; Metazoa - 8237; Fungi - 5197; Plants - 4939; Viruses - 12; Other Eukaryotes - 55663 (source: NCBI BLink).Coding geneHOM03M000484 orphan gene
V AT3G47770ABC2 homolog 5Coding geneHOM03M000484 orphan gene
V AT3G47780ABC2 homolog 6 (ATH6); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 2 (TAIR:AT3G47740.1); Has 392088 Blast hits to 359274 proteins in 4025 species: Archae - 7301; Bacteria - 309060; Metazoa - 8340; Fungi - 5303; Plants - 5008; Viruses - 16; Other Eukaryotes - 57060 (source: NCBI BLink).Coding geneHOM03M000484 orphan gene
V AT3G47790ABC2 homolog 7Coding geneHOM03M000484 orphan gene
X AT3G47800Galactose mutarotase-like superfamily protein; FUNCTIONS IN: aldose 1-epimerase activity; INVOLVED IN: galactose metabolic process, hexose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Aldose 1-epimerase, subgroup (InterPro:IPR015443), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT5G15140.1); Has 4663 Blast hits to 4656 proteins in 1452 species: Archae - 5; Bacteria - 3197; Metazoa - 273; Fungi - 257; Plants - 219; Viruses - 0; Other Eukaryotes - 712 (source: NCBI BLink).Coding geneHOM03M000680 ORTHO03M011454
X AT3G47810MAIGO 1 (MAG1); FUNCTIONS IN: hydrolase activity, acting on ester bonds, protein serine/threonine phosphatase activity; INVOLVED IN: endosome to lysosome transport, protein targeting to vacuole; LOCATED IN: microsome, retromer complex, membrane, multivesicular body; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphodiesterase MJ0936 (InterPro:IPR000979); Has 1298 Blast hits to 1264 proteins in 597 species: Archae - 104; Bacteria - 671; Metazoa - 203; Fungi - 159; Plants - 64; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).Coding geneHOM03M004790 orphan gene
X AT3G47820PLANT U-BOX 39Coding geneHOM03M000053 orphan gene
X AT3G47830DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: demeter-like 1 (TAIR:AT2G36490.1); Has 4804 Blast hits to 4804 proteins in 1691 species: Archae - 231; Bacteria - 3044; Metazoa - 109; Fungi - 99; Plants - 198; Viruses - 0; Other Eukaryotes - 1123 (source: NCBI BLink).Coding geneHOM03M007178 orphan gene
X AT3G47833unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62575.2); Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM03M005891 orphan gene
X AT3G47836unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneorphan geneorphan gene
X AT3G47840Pentatricopeptide repeat-containing proteinCoding geneHOM03M000001 orphan gene
X AT3G47850unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 57 Blast hits to 57 proteins in 32 species: Archae - 0; Bacteria - 5; Metazoa - 12; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).Coding geneHOM03M007444 orphan gene
X AT3G47860chloroplastic lipocalin (CHL); FUNCTIONS IN: binding; INVOLVED IN: response to oxidative stress; LOCATED IN: thylakoid lumen, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipocalin-like (InterPro:IPR013208), Lipocalin conserved site (InterPro:IPR022272), Calycin (InterPro:IPR012674), Calycin-like (InterPro:IPR011038); Has 184 Blast hits to 184 proteins in 68 species: Archae - 0; Bacteria - 14; Metazoa - 66; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).Coding geneHOM03M007475 ORTHO03M006419
X AT3G47870LOB domain-containing protein 27Coding geneHOM03M000103 ORTHO03M005961
X AT3G47875non-LTR retrotransposon family (LINE), has a 9.1e-40 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)Transposon
X AT3G47890Ubiquitin carboxyl-terminal hydrolase-related proteinCoding geneHOM03M002670 orphan gene
X AT3G47910Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT3G47890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding geneHOM03M002670 orphan gene
X AT3G47920unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41590.1); Has 154 Blast hits to 152 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM03M004009 ORTHO03M000690
X AT3G47930'L-galactono-1,4-lactone dehydrogenase' (GLDH); FUNCTIONS IN: galactonolactone dehydrogenase activity, L-gulono-1,4-lactone dehydrogenase activity; INVOLVED IN: L-ascorbic acid biosynthetic process; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Galactonolactone dehydrogenase (InterPro:IPR010029), Actin-binding FH2 (InterPro:IPR015425), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: D-arabinono-1,4-lactone oxidase family protein (TAIR:AT5G56490.1); Has 6177 Blast hits to 6159 proteins in 1453 species: Archae - 118; Bacteria - 3787; Metazoa - 393; Fungi - 445; Plants - 381; Viruses - 3; Other Eukaryotes - 1050 (source: NCBI BLink).Coding geneHOM03M003243 orphan gene
X AT3G47940DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT1G10350.1); Has 27840 Blast hits to 26488 proteins in 3397 species: Archae - 203; Bacteria - 10747; Metazoa - 4580; Fungi - 2597; Plants - 2794; Viruses - 15; Other Eukaryotes - 6904 (source: NCBI BLink).Coding geneHOM03M000055 orphan gene
V AT3G47950H(+)-ATPase 4Coding geneHOM03M000298 orphan gene
V AT3G47960Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G62680.1); Has 3941 Blast hits to 3750 proteins in 534 species: Archae - 0; Bacteria - 697; Metazoa - 584; Fungi - 378; Plants - 2186; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).Coding geneHOM03M000029 ORTHO03M000480
X AT3G47965unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).Coding geneorphan geneorphan gene
X AT3G47980Integral membrane HPP family proteinCoding geneHOM03M005448 orphan gene
X AT3G47990SUGAR-INSENSITIVE 3 (SIS3); FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: sugar mediated signaling pathway; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G66070.1); Has 9412 Blast hits to 9385 proteins in 270 species: Archae - 0; Bacteria - 0; Metazoa - 2601; Fungi - 698; Plants - 4895; Viruses - 18; Other Eukaryotes - 1200 (source: NCBI BLink).Coding geneHOM03M005909 orphan gene
X AT3G48000aldehyde dehydrogenase 2B4Coding geneHOM03M000214 ORTHO03M000348
V AT3G48010cyclic nucleotide-gated channel 16 (CNGC16); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 18 (TAIR:AT5G14870.1); Has 3330 Blast hits to 3084 proteins in 251 species: Archae - 0; Bacteria - 33; Metazoa - 1612; Fungi - 37; Plants - 1021; Viruses - 0; Other Eukaryotes - 627 (source: NCBI BLink).Coding geneHOM03M000201 orphan gene