Table Overview Functional Clusters: Oryza sativa ssp. japonica top

Data Overview


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Cluster id E-value Cluster size Chromosome InterPro Description
CH_osa_11.278e-30725IPR001878Zinc finger, CCHC-type
CH_osa_20.0000000000000046132575IPR005162Retrotransposon gag domain
CH_osa_30.0000000000000816159548IPR005162Retrotransposon gag domain
CH_osa_40.00000000000124826504IPR001878Zinc finger, CCHC-type
CH_osa_50.00000000000882549178IPR013242Retroviral aspartyl protease
CH_osa_60.0000000000244155454IPR005162Retrotransposon gag domain
CH_osa_70.0000000000519696505IPR000477Reverse transcriptase
CH_osa_80.000000000301401645IPR012337Ribonuclease H-like domain
CH_osa_90.0000000003645746212IPR012337Ribonuclease H-like domain
CH_osa_100.000000004130222810IPR023780Chromo domain
CH_osa_110.00000000525884573IPR012337Ribonuclease H-like domain
CH_osa_120.00000000741984166IPR013242Retroviral aspartyl protease
CH_osa_130.00000001144275910IPR012337Ribonuclease H-like domain
CH_osa_140.0000000116215143IPR001878Zinc finger, CCHC-type
CH_osa_150.00000001709034210IPR001878Zinc finger, CCHC-type
CH_osa_160.0000000174323357IPR001878Zinc finger, CCHC-type
CH_osa_170.00000004752081010IPR001128Cytochrome P450
CH_osa_180.000000083463458IPR012337Ribonuclease H-like domain
CH_osa_190.00000008669832812IPR013242Retroviral aspartyl protease
CH_osa_200.0000004040232812IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
CH_osa_210.000002382241310IPR021109Aspartic peptidase domain
CH_osa_220.000003982291010IPR023780Chromo domain
CH_osa_230.00000445993394IPR005162Retrotransposon gag domain
CH_osa_240.000005622463111IPR021109Aspartic peptidase domain
CH_osa_250.00000689321558IPR012337Ribonuclease H-like domain
CH_osa_260.000010058167IPR013242Retroviral aspartyl protease
CH_osa_270.00001347531011IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
CH_osa_280.00001506531011IPR002182NB-ARC
CH_osa_290.0000291914114IPR008552Domain of unknown function DUF834
CH_osa_300.0000666638534IPR012337Ribonuclease H-like domain
CH_osa_310.0000852096534IPR012337Ribonuclease H-like domain
CH_osa_320.000138658374IPR001878Zinc finger, CCHC-type
CH_osa_330.000140435415IPR000477Reverse transcriptase
CH_osa_340.000143851011IPR002290Serine/threonine- / dual specificity protein kinase, catalytic domain
CH_osa_350.000152013710IPR001878Zinc finger, CCHC-type
CH_osa_360.000187579417IPR012337Ribonuclease H-like domain
CH_osa_370.0002327183911IPR005162Retrotransposon gag domain
CH_osa_380.000238595374IPR005162Retrotransposon gag domain
CH_osa_390.0002725355011IPR012337Ribonuclease H-like domain
CH_osa_400.000322223164IPR003653Peptidase C48, SUMO/Sentrin/Ubl1
CH_osa_410.0003745443912IPR005162Retrotransposon gag domain
CH_osa_420.000428785224IPR004242Transposon, En/Spm-like
CH_osa_430.000440241506IPR012337Ribonuclease H-like domain
CH_osa_440.000514573379IPR001584Integrase, catalytic core
CH_osa_450.000604888474IPR012337Ribonuclease H-like domain
CH_osa_460.000720579294IPR000477Reverse transcriptase

Experiments Overview

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal Cluster count
13InterProNo filter applied.230800.001X858
14InterProNo filter applied.101503000.001X144
15InterProNo filter applied.230800.001V113
16InterProNo filter applied.101503000.001V46
17MapManNo filter applied.230800.001X431
18MapManNo filter applied.101503000.001X124
19MapManNo filter applied.230800.001V45
20MapManNo filter applied.101503000.001V46