Functional clusters   top

Information

Type
InterPro domain
Identifier
IPR002885
Description
Pentatricopeptide repeat

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana113CH_ath_34611630.0000383153
Arabidopsis thaliana114CH_ath_39151000.000000352172
Oryza sativa ssp. indicaChr1013CH_osaindica_29413740.0000000136888
Oryza sativa ssp. indicaChr1014CH_osaindica_8613740.0000000136888
Oryza sativa ssp. japonica1013CH_osa_39711700.00000145426
Oryza sativa ssp. japonica1014CH_osa_103172020.000000194185
Populus trichocarpaChr0513CH_ptr_30613560.0000000951625
Populus trichocarpaChr0514CH_ptr_9513560.0000000951625
Sorghum bicolorchr_513CH_sbi_24712500.000000145523
Sorghum bicolorchr_514CH_sbi_5712500.000000145523
Zea mays213CH_zma_5214420.00000000000720367
Zea mays214CH_zma_1714420.00000000000720367

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1GOPrimary GO data only.230800.001X
2GOPrimary and orthology projected GO data.230800.001X
3GOAll GO data.230800.001X
4GOPrimary GO data only.101503000.001X
5GOPrimary and orthology projected GO data.101503000.001X
6GOAll GO data.101503000.001X
7GOPrimary GO data only.230800.001V
8GOPrimary and orthology projected GO data.230800.001V
9GOAll GO data.230800.001V
10GOPrimary GO data only.101503000.001V
11GOPrimary and orthology projected GO data.101503000.001V
12GOAll GO data.101503000.001V
13InterProNo filter applied.230800.001X
14InterProNo filter applied.101503000.001X
15InterProNo filter applied.230800.001V
16InterProNo filter applied.101503000.001V
17MapManNo filter applied.230800.001X
18MapManNo filter applied.101503000.001X
19MapManNo filter applied.230800.001V
20MapManNo filter applied.101503000.001V