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Data
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Gene families
Expansion plot
Gene family finder
Colinearity
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Localization
Functional clusters
WGMapping
Other
BLAST
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Search
Gene
GO/InterPro/MapMan description
Binding site description/sequence
Gene family
GO ID
MapMan ID
TF family
All species
Arabidopsis thaliana
Brachypodium distachyon
Carica papaya
Chlamydomonas reinhardtii
Hordeum vulgare
Musa acuminata
Oryza sativa ssp. indica
Oryza sativa ssp. japonica
Ostreococcus lucimarinus
Physcomitrella patens
Populus trichocarpa
Setaria italica
Solanum lycopersicum
Sorghum bicolor
Vitis vinifera
Zea mays
Monocots PLAZA 3.0
Other
Overview page
Active versions
pico-PLAZA 2.0
Gymno PLAZA 1.0
Monocots PLAZA 4.0
Dicots PLAZA 4.0
Monocots PLAZA 4.5
Archive
PLAZA 1.0
PLAZA 2.0
PLAZA 2.5
Dicots PLAZA 3.0
BLAST page
Program
blastn
blastp
blastx
tblastn
tblastx
Database
PLAZA Protein Sequences
PLAZA Transcript Sequences
Arabidopsis thaliana Genome Sequence
Brachypodium distachyon Genome Sequence
Carica papaya Genome Sequence
Chlamydomonas reinhardtii Genome Sequence
Hordeum vulgare Genome Sequence
Musa acuminata Genome Sequence
Oryza sativa ssp. indica Genome Sequence
Oryza sativa ssp. japonica Genome Sequence
Ostreococcus lucimarinus Genome Sequence
Physcomitrella patens Genome Sequence
Populus trichocarpa Genome Sequence
Setaria italica Genome Sequence
Solanum lycopersicum Genome Sequence
Sorghum bicolor Genome Sequence
Vitis vinifera Genome Sequence
Zea mays Genome Sequence
Enter sequence below in
FASTA
format
Advanced options
Filter low complexity
On
Off
Expect
1e-10
1e-5
0.001
0.1
1
10
Matrix
PAM30
PAM70
BLOSUM45
BLOSUM62
BLOSUM80
Perform gapped alignment
Query Genetic codes - (T)Blastx only
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Output format
Pairwise
query-anchored showing identities
query-anchored no identities
flat query-anchored, show identities
flat query-anchored, no identities
XML BLAST output
tabular
tabular with comment lines
Text ASN.1
Binary ASN.1
Comma-seperated values
BLAST archive format (ASN.1)
Descriptions
0
1
10
50
100
250
500
Alignments
0
1
10
50
100
250
500
Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench